barSeed - Barley Seed Development Database

Probe CUST_28006_PI390587928

Source Contig U35_25042

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28006_PI390587928	Hv_44K_v2	TCGAACTGTCTATTCCTTTTGGGGGAAATTGTATTGTCCATTCTTGGGATAATCTTATAT	651	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.004	2.284	1.223	0.707	0.345	0.333
Raw	1823.640	2172.715	1018.011	911.977	158.763	167.306

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75966.2	1199	2e-24	1115 - 1174	100	60 / 60	plus	None
MLOC	MLOC_75966.1	1318	2e-24	1119 - 1178	100	60 / 60	plus	None
JLOC1	JLOC1_50672.1	1338	8e-25	1120 - 1179	100	60 / 60	plus
Harvest35	U35_25042	718	3e-25	652 - 711	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_25042 718 Hv_44K_v2
TTTGAATGGGTGCATGTGAACAAAGTTACTTCTGTCTCAGAGTTGACAAAACCATCATGG
AGTGAAACTTTTCTTCTGTCAACTCTTCAGAAGTTTTTTGAGGTTGTCCTTCGCCTACCT
GATGTAAACCAGAGAATGCACAAGGTCCTCTCGGTTCTTTCGGATAAGCAGCCGCCCTGC
CCCCAGTTCTACCTGTACAGCTCCGCCGACAGAGTGATCCCTGCCGAATGCGTGGAGAGC
TTCATCAACATGCAGAGATCACTGGGGCTGAGCGTCTCATCACACAATTTTGTCTCGTCG
CCGCATGTGGACCACTACAGGAGCTTTCCTCACCTGTACTCTGCCAAGATCGACGAGTTC
CTGAAGGTCTGTTCCCCAGTTAGTGTATGATGATGAAACGACGATTAATCTTGCTGAAGA
TCTGTTCCCTACTTAGAGATGAGTTGATGGTTAGCCTTTTGACCAACACGGTGGTTGAAG
ATTCTAGTGACAATTTGATCGGTTTTGTATTTTTTCAGCGTAAGTAGCGCGCGTGCGATG
TAGGATGCTTCTACATGGGTGTTTGAGGAGGGGTAATATCGCCGCATCGTCAAGCATCCA
TGTGAGCTTCATCTACTCAAACTCAAGCAACTCTTTGTAGGTACGTGATGATCGAACTGT
CTATTCCTTTTGGGGGAAATTGTATTGTCCATTCTTGGGATAATCTTATATGTTAAGC

Homology of Contig U35_25042 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04110.1	381	3e-58	protein\|expressed protein
Brachypodium v1_2	Bradi3g03050.1	381	5e-69
Arabidopsis v10	None