barSeed - Barley Seed Development Database

Probe CUST_28002_PI390587928

Source Contig U35_25047

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28002_PI390587928	Hv_44K_v2	CCAGTTTCTGTCATACGTTATTCCAGCAATGGCGAATATTCAGCAATCACTGGTGAAGGC	527	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.607	0.601	2.692	4.604	1.358	1.401
Raw	4.462	7.050	35.229	95.480	9.936	10.686

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51368.1	2980	2e-24	998 - 1057	100	60 / 60	plus	ABC19828 ABC29291
MLOC	MLOC_51368.2	3066	2e-24	893 - 952	100	60 / 60	plus	ABC19828 ABC29291
JLOC1	JLOC1_32812.1	2221	8e-25	155 - 214	100	60 / 60	plus
Harvest21	ABC22986	587	3e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_25047	587	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_25047 587 Hv_44K_v2
AGCTTCAGCTACTCACTATCTTCATCCTCCTCTCAACCCCACCAACCCCCCCAAATCCCA
CCGCCGAGCTCACAACGTCCAAGAAACCACTCGCGGGCAGCTTGACACGCCGCGGATCCA
GGCCCTGCGATGGCCGCTTGGGCGGCGCTCCTGGCCGTCGTCCTCGCGCTGTCGTGCGCG
CGGGAGCGGCGGCTCCTGGCGGCCGACGCGGCCGTGGGGGTCAACTGGGGCACCCTGTCG
TCGCACCGCGCGCCGCCGCAGGTGGTGGTGGACCTCCTCCGGGCCAACCGGATCGGGAAG
GTCAAACTCTTCGACGCCGATGCCAGCGTGCTGCGCGCGCTGGCGCGCAGCGGCATCGAG
GTCATGGTCGGCGTCACCAACGGCGAGCTCGCCGGCATCGCCGGGTCCCCGGCGGCCGCC
GATGCCTGGGTCGCGCAGAACGTCTCGCGCTACGTCGGCCGCGGCGGCGGCGTCGACATC
CGATATATTGCAGTGGGAAATGAGCCATTTCTGACAAGCTACCAGGGCCAGTTTCTGTCA
TACGTTATTCCAGCAATGGCGAATATTCAGCAATCACTGGTGAAGGC

Homology of Contig U35_25047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g09980.1	489	8e-58	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi2g18420.1	488	6e-60
Arabidopsis v10	None