barSeed - Barley Seed Development Database

Probe CUST_27998_PI390587928

Source Contig U35_37022

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27998_PI390587928	Hv_44K_v2	GACACCTATGAAGACACAGGAGATCATTCAACACCTTCATATTTTGTCGCAGAAGAGCCT	191	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.224	0.572	1.366	2.065	1.045	1.174
Raw	17.320	68.593	145.562	361.022	60.650	76.203

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04360	1044	3e-25	794 - 853	100	60 / 60	minus	ABC04360
Harvest35	U35_37022	520	3e-25	192 - 251	100	60 / 60	plus

Contig Sequence (520 bp)

>U35_37022 520 Hv_44K_v2
GCCTTGATGATGACGACGACGGCGAAGGCTGGCTCGCAACACATGGGGTGCAAGCATCAG
AGTCGAAAGAGGAGGAAGACATTCCGTCTATGGATACATTGGACATAGGGAAAGTCGAAG
AGATCAAATCTATCCCCTCGTACTTTGGTGCTAGTGAAAAGCCAGATGAGGAGGAGGATA
TACCTGACATGGACACCTATGAAGACACAGGAGATCATTCAACACCTTCATATTTTGTCG
CAGAAGAGCCTGATGATGACAACATTCTTCTTACTAGAACATATGATGTCAGCATCACAT
ATGACAAGTACTATCAAACTCCACGTGTCTGGCTTACAGGCTATGATGAGGCAAGAATGC
CATTAAAGCCTGACCTTGTGTTTCAAGATATCAGTCAAGACCATGCACACAAAACGGTGA
CTATCGAAGACCACCCACACTTGTTAGCAGGACAGCACGCCTCAGTGCATCCTTTGCAGC
ATGCCGCTGTGATGAAAAAGATCATTGATGTTATGATGTC

Homology of Contig U35_37022 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10290.2	317	2e-102	protein\|autophagy-related protein 3, putative, expressed
Brachypodium v1_2	Bradi3g33350.1	317	9e-109
Arabidopsis v10	AT5G61500.1	313	8e-75	\| Symbols: ATATG3, ATG3 \| autophagy 3 (APG3) \| chr5:24734216-24736711 REVERSE LENGTH=313