barSeed - Barley Seed Development Database

Probe CUST_27997_PI390587928

Source Contig U35_37023

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27997_PI390587928	Hv_44K_v2	TGTTAGCTATTTTGCTTGTTTTGTCCATGAGTGTTCGTGGTGATTGGTGAAGCATTCACC	274	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.278	0.821	1.146	1.449	0.858	0.696
Raw	5.292	29.373	33.539	62.575	14.147	12.857

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66546.3	2218	2e-24	1404 - 1463	100	60 / 60	plus	ABC15334 ABC15335
JLOC1	JLOC1_43865.2	2559	8e-25	1403 - 1462	100	60 / 60	plus
Harvest21	ABC32602	334	3e-25	275 - 334	100	60 / 60	plus
Harvest35	U35_37023	334	3e-25	275 - 334	100	60 / 60	plus

Contig Sequence (334 bp)

>U35_37023 334 Hv_44K_v2
GGCGGCGTGGAGAAGGTGGTGGAGAGGAGGCAGAGGAGGATGATCAAGAACAGGGAGTCC
GCCGCCAGGTCCCGCGCCCGCAAGCAGGCTTATACAATGGAGTTGGAGGCTGAGGTTCAG
AAGCTCAAGGATCTGAACGAGGAACTGGTGAAGAAACAGGTAGCATTTCTGCAAACCACT
GACATGCTAAATGTGCAGCTTCAGTGCATTTTGTGTAGAGGATTTATAGCATATACACAC
TCTGAAGTGGATAGTTTCACCCGGTAGACCCCACTGTTAGCTATTTTGCTTGTTTTGTCC
ATGAGTGTTCGTGGTGATTGGTGAAGCATTCACC

Homology of Contig U35_37023 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None