barSeed - Barley Seed Development Database

Probe CUST_27996_PI390587928

Source Contig U35_37024

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27996_PI390587928	Hv_44K_v2	TGTATCTTTTCATCAAGGGGCTTTTAGTGCTTTTCCATCGGCACAAACACCACCAGTTCA	247	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.408	0.648	2.283	2.326	1.161	0.846
Raw	32.764	72.618	249.946	381.039	70.059	56.563

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37025.5	5413	7e-23	1136 - 1195	98	59 / 60	minus	None
MLOC	MLOC_37025.6	5488	7e-23	1211 - 1270	98	59 / 60	minus	None
MLOC	MLOC_37025.1	4765	7e-23	797 - 856	98	59 / 60	minus	None
MLOC	MLOC_37025.9	4947	7e-23	702 - 761	98	59 / 60	minus	ABC12752
MLOC	MLOC_37025.10	4940	7e-23	871 - 930	98	59 / 60	minus	None
MLOC	MLOC_37025.8	4815	7e-23	756 - 815	98	59 / 60	minus	None
MLOC	MLOC_37025.3	4902	7e-23	626 - 685	98	59 / 60	minus	None
MLOC	MLOC_37025.7	5166	7e-23	993 - 1052	98	59 / 60	minus	ABC12752
MLOC	MLOC_37025.11	5157	7e-23	856 - 915	98	59 / 60	minus	None
MLOC	MLOC_37025.4	5417	7e-23	1141 - 1200	98	59 / 60	minus	None
MLOC	MLOC_37025.2	5072	7e-23	771 - 830	98	59 / 60	minus	None
JLOC1	JLOC1_23919.7	5045	4e-23	4214 - 4273	98	59 / 60	plus
JLOC1	JLOC1_23919.6	5010	4e-23	4179 - 4238	98	59 / 60	plus
JLOC1	JLOC1_23919.5	5249	4e-23	4200 - 4259	98	59 / 60	plus
JLOC1	JLOC1_23919.4	5338	4e-23	4214 - 4273	98	59 / 60	plus
JLOC1	JLOC1_23919.3	5190	4e-23	4208 - 4267	98	59 / 60	plus
JLOC1	JLOC1_23919.2	5257	4e-23	4208 - 4267	98	59 / 60	plus
JLOC1	JLOC1_23919.1	5302	4e-23	4178 - 4237	98	59 / 60	plus
Harvest21	ABC32603	416	3e-25	248 - 307	100	60 / 60	plus
Harvest35	U35_37024	416	3e-25	248 - 307	100	60 / 60	plus

Contig Sequence (416 bp)

>U35_37024 416 Hv_44K_v2
GGTCATCTCCATCATCACTGGGTTATCAGCATGCCGTGCCAGAATATTTTAGGCCTCCCA
ATGGTAACCACCTAACAGGAAATTCATCAATTCAAGGTGTTGGAAATACGCCGAACTTTA
TGCCTGCTGGACCAGTGAATGCACAAGCTCCAGTTAATTATGTGCCATCATTGCCACCAG
ATTATGCAAGCAACAATATCTTTCTGCCACAGCAAGCTTCTAATGGTAATTATCAGTTTC
AGTCTGGTGTATCTTTTCATCAAGGGGCTTTTAGTGCTTTTCCATCGGCACAAACACCAC
CAGTTCATCCCCATGCTCATCACACACACATGAACCCCATGGGCCAACAATCTGTACCAC
CTCCATGCAATTCTTATGGTGTACAAGCCTTTCCAAATAGCCAAAGCCAGTATACA

Homology of Contig U35_37024 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g12902.1	1438	2e-58
Arabidopsis v10	None