barSeed - Barley Seed Development Database

Probe CUST_27995_PI390587928

Source Contig U35_13070

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27995_PI390587928	Hv_44K_v2	GGCCCCCAAGTGATCATGGATAACCAGATAATGATTCCAGGAAATATATATCAGTCATGG	884	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.971	1.398	1.783	1.317	0.599	0.578
Raw	62.258	111.197	153.332	166.618	28.004	29.318

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362496	2342	2e-24	943 - 1002	100	60 / 60	plus	ABC25991
MLOC	MLOC_1127.3	359	2e-24	256 - 315	100	60 / 60	plus	None
MLOC	MLOC_1127.2	388	2e-24	285 - 344	100	60 / 60	plus	None
MLOC	MLOC_1127.4	583	2e-24	480 - 539	100	60 / 60	plus	None
JLOC1	JLOC1_695.1	565	8e-25	462 - 521	100	60 / 60	plus
Harvest35	U35_13070	947	3e-25	885 - 944	100	60 / 60	plus

Contig Sequence (947 bp)

>U35_13070 947 Hv_44K_v2
CCTCCGCAGCGCGGCGTCGCCTTCCCCTCCTCCGACCTCACCGCGGCGGCGGCGGACGGG
ATGTTCTACTCGCACCAGCTCCTCGCGCGGAAGGCGCCGCTCGGCCAGATATGGATCGCC
GCCACGTTCAAATCCAAGATAAATCGGAGGCGGCTCGACAAGCTCGACATCATCAAGATC
TGCGAGGAGATCCTGAACCCGTCGGTGCCCATGGCGCTCAGGCTCTCCGGGATCCTCATG
GGTGGCGTGGTGATCGTGTACAAGAAGAAGGTGAAGCTTCTCTACGATGATGTGTCCCGT
CTTCTGATTGAGCTCAACCAGGCATGGAAGATCAGGCCGGCCGTGGACCACACCCTGCTC
CCCAAGGGCAAGGCTCAAGCCAAGTATGAAGCAGTAACACTTCCAGAGAACATGATGGAT
ATGGAGCTGGAGCGGCCCGTGCTTTTCACAAATACTGATACTGCCAGGTTCCGGGGAATG
CGCCTGGAGGATTTGGATGAACAGTATGTCAATGTCAACCTGGATGATGATGACATCTCT
CGCACCGATCGTCATCATCAAGCTGAGGCAGTCAACATTACCCTGGTTGATAATTTTGAG
TCTGGCTTTGCTGAAACTGACATCTTCAATCGTTTTGAGAGATTTGACATAGCAGATGAT
GACACCATCTTCAATATTACTCCCGATGGACACCCAGAGGCTCCAAGTACACTAGTTCCC
TCTCCACCAAGGCCGGAAGACCCTTTTCAGCAACAGCAACAGCGTGCTGCCCCATCCCCC
ATCCGTGAAGAACCTCAACAAGGGGATTCATTGAAGGAGCAAGAGGAGCAGAAGACGAAG
GAGGAACAACAACTANACGAGCAAAGAGGAAAGCATGCGGCAAGGGCCCCCAAGTGATCA
TGGATAACCAGATAATGATTCCAGGAAATATATATCAGTCATGGTTG

Homology of Contig U35_13070 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g50410.2	587	8e-123	protein\|Rad21 / Rec8 like protein, putative, expressed
Brachypodium v1_2	Bradi2g15127.1	604	5e-131
Arabidopsis v10	AT5G05490.1	627	1e-57	\| Symbols: SYN1, ATREC8, REC8 \| Rad21/Rec8-like family protein \| chr5:1624325-1629144 FORWARD LENGTH=627