barSeed - Barley Seed Development Database

Probe CUST_27993_PI390587928

Source Contig U35_13072

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27993_PI390587928	Hv_44K_v2	ATTTAGGCGGATCATCATTACAGGTGACATTTGAGACTGACAAAGCCGTCCAAGGTGACA	848	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.996	0.874	1.499	1.401	0.714	0.663
Raw	16.319	23.290	33.900	46.425	9.035	8.944

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56258.2	3206	2e-24	1292 - 1351	100	60 / 60	plus	ABC14543
MLOC	MLOC_56258.1	3201	9e-22	1338 - 1392	100	55 / 55	plus	ABC14543
JLOC1	JLOC1_36375.1	3305	8e-25	1291 - 1350	100	60 / 60	plus
Harvest21	ABC24505	963	3e-25	849 - 908	100	60 / 60	plus
Harvest35	U35_13072	963	3e-25	849 - 908	100	60 / 60	plus

Contig Sequence (963 bp)

>U35_13072 963 Hv_44K_v2
GATAATTTCCACCTTGACTACAAAAGAAGCAGCTATGCGGCTTTCTTCTTCTCTTATAGA
TCTGCCAACTTTTTCTAGAATTGACACTTTAGAAAGGGGCTCTAGCATTGGTGGTGATGT
GAGTTCAGGGCGTGCGAAGCCTGTCCGCACACTTCAAAGAGAAGGTCCTGTAGCAAGCTT
TTCAAAAGAGAGAACACCCCCATCATCGCCAACAAATCGAAAGAAATGGATGAGAACAGT
TGGTTGGGCTGTTGCTCTGATCCTATTGGTGTGCTTCATATATGCTTCTTTGAGATATTT
CCATGTCTTCCTCTCAGAAGGTAGCTCTGAATACTATGTGATTCTTGATTGTGGCAGCAC
TGGTACAAGAGTGTATGTTTACGAGTGGTCCATCAATCATAATGATGGAAATTCGTTTCC
TATTGCTTTGAAACCTTTAGGAAATGCTCCTAAGAAAAAATCTGGTAAATTAATTGGGCG
TGCCTATCAACGAATGGAAACTGAACCTGGGTTGAGCAAGCTTGTTCACAATGAAACTGG
AATGAAGCAGGCAATAGAGCCCCTACTCCAAATGGCTGAGCGGCAGATCCCTAGACGTGC
ACACAAGCACACTCCTGTTTTTCTATATGCCACAGCTGGTGTCCGCAAGCTACCAGCTGC
AGACTCAGAGTGGCTTATGGATAACGCTTGGGATGTTCTGAAGAATTCTTCATTTTCTTG
TAGTAGAGACAGAGTTAAGATCATCACTGGCATGGAGGAAGCTTATTATGGATGGGTAGC
TCTTAACCACCACCTGAACATGCTTGGTACCTCATCTTCTGCTTCTGAAATGACTTATGG
TTCACTTGATTTAGGCGGATCATCATTACAGGTGACATTTGAGACTGACAAAGCCGTCCA
AGGTGACACAGNNGCGTGGTCTGACTATTGGTTCTGTCAATCATCAACTTAGTGCTTATT
CTC

Homology of Contig U35_13072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g21000.1	703	4e-174	protein\|nucleoside-triphosphatase, putative, expressed
Brachypodium v1_2	Bradi1g55820.1	706	0.0
Arabidopsis v10	AT4G19180.1	740	6e-75	GDA1/CD39 nucleoside phosphatase family protein \| chr4:10485518-10487868 REVERSE LENGTH=740