barSeed - Barley Seed Development Database

Probe CUST_2798_PI390587928

Source Contig U35_10860

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2798_PI390587928	Hv_44K_v2	ACTGGATGTAGGTGAAGATAAGCTCTCTTCTCAGAATATTTCATCAAAGAGCAAAGAAAG	393	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.934	1.721	1.192	0.828	0.655	0.507
Raw	59.425	73.002	49.059	43.894	15.608	12.637

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375886	3179	2e-24	1381 - 1440	100	60 / 60	plus	ABC25813
MLOC	MLOC_78180.3	2013	2e-24	567 - 626	100	60 / 60	minus	None
MLOC	MLOC_78180.1	2544	2e-24	1101 - 1160	100	60 / 60	minus	None
MLOC	MLOC_78180.2	2683	2e-24	1240 - 1299	100	60 / 60	minus	None
JLOC1	JLOC1_52109.1	2789	8e-25	1386 - 1445	100	60 / 60	plus
Harvest21	ABC24146	616	3e-25	394 - 453	100	60 / 60	plus
Harvest35	U35_10860	616	3e-25	394 - 453	100	60 / 60	plus

Contig Sequence (616 bp)

>U35_10860 616 Hv_44K_v2
GCCTACTTCATGTTCTGCACCCAAACAGAAAACACTGGACAATGTGTTTATTTTTGATGA
GAAATGCACACCCAAAACTGCGGGGAAATCTGCAATTGGTAACTCTGTCTGCTTGAGAAA
TCTTATAAGCTCAAATCGGAAGGCTAAAGTAAAGCTTAAGAAGGTCCATTGTTCTGACAA
GATCACACCGGATGATAGAGGAGGACAGCCATCTTCTAGAAATGTACCATCAGAGAATAA
AGGAGAGAAAACCACCTCCTTTTCTTCTTTGTCACGAACTGGGAAAACTGCTGAGAGCTG
TTCTAGAAGCCCTACAAGGGAGAAACGGCTGAATGGAATGGCTAAAGTTGGGCCTCAGAA
GATGCAGTTTTCAGAAAAGTTGCTGCCCGCGACACTGGATGTAGGTGAAGATAAGCTCTC
TTCTCAGAATATTTCATCAAAGAGCAAAGAAAGTTATTCTTCATTGCTGCACCGCACGGA
GAAAGCTAATTTGAGCAAAGCTTCAGACGGAAGCCCCCAGGCACATAAAGCAGCAGGAAA
TAATTTTAGCTCACCACCAGCTGGTGCTGCTATTCCATCACCTGAACCGAAAATGTATCC
ATGGGACAACGAGGCA

Homology of Contig U35_10860 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g59847.1	851	7e-65
Arabidopsis v10	None