- Probe CUST_27988_PI390587928
- Source Contig U35_49004
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27988_PI390587928 | Hv_44K_v2 | ATAATCTGACGCCCGTGCGTCGTGTATCTCCATCGTTGTTCCGCTTTCCCATTTTTCCTT | 15 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.762 | 2.283 | 1.051 | 0.765 | 0.690 | 0.220 |
| Raw | 77.120 | 101.857 | 40.275 | 48.826 | 12.472 | 3.156 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355062 | 1544 | 2e-24 | 1191 - 1250 | 100 | 60 / 60 | plus | ABC06075 |
| MLOC | MLOC_76936.1 | 1425 | 2e-24 | 80 - 139 | 100 | 60 / 60 | minus | ABC06075 |
| JLOC1 | JLOC1_51310.1 | 1709 | 8e-25 | 1259 - 1318 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC50911 | 297 | 3e-25 | 16 - 75 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC06075 | 1500 | 3e-25 | 1181 - 1240 | 100 | 60 / 60 | plus | ABC06075 |
| Harvest35 | U35_49004 | 297 | 3e-25 | 16 - 75 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_1245 | 1577 | 3e-25 | 1190 - 1249 | 100 | 60 / 60 | plus |
Contig Sequence (297 bp)
>U35_49004 297 Hv_44K_v2 AAGAACGCGCAACGCAAGGAAAAATGGGAAAGCGGAACAACGATGGAGATACACGACGCA CGGGCGTCAGATTATTCGTGCATGGACAAGTGGCTGCTGGCTCACATCAGATGTCCGCGG CCGCGCCGTCGTCCATCTCCTCGGCGCTCTTCCCGAGCAGCGGCACGAACTTGAGCATGA CTTGGACGGCGCTGCAGCCCTTGCTGACTCGGGTGACCCGCGGCGCGCGGGGCAGGCACG TCGTGGCGTTCACGCACGCCGGCAGCTCCATGCCCTCCAGCTTCTTCGCCAGCGCGT
Homology of Contig U35_49004 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |