barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27973_PI390587928Hv_44K_v2CGACATTTTATCTATGGTTTGATTTATGCTGGCTACGATGAAATCAGAGATTGTCTCTCG1019GeneList: darkgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6282.0363.2131.6640.7090.392
Raw 44.445222.006301.140234.33736.37122.419



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_2505910963e-251020 - 107910060 / 60plus



Contig Sequence (1096 bp)

>U35_25059 1096 Hv_44K_v2
GGATCAGCAGCAGCAGCCTCTGCTGCGTGCTCGTCTGGTGGTCCATGCCGGACGAGGTCG
ACGTCGTTGCCGCCCCACGGCTGCAGCGGCTCATCCTGCAGTGCATTGGAACTAGGCGCA
CCACCAAGGTCAGGATTGGGCATGCTCCTGAGCTCACCGTGCTCGGCTACCTGGAGACGG
CGAAGCATGTGCTACAGATCGGCAACACCATCATCAAGGCCGGGGTAACAAAAGTGTCCC
CAAATGTTGTGGTTCCAAGCGTCAAGGTGCTAGCTTTGAAGGTGAATTTCGAAGTAGCCG
AGGAAGTGAAGACCATGCTCAGTTTCCTGAGGTGCTTTCCCCAAGTCGAGACCCTACACG
TCATGTCCTCCAACGGGAAGGAAGAGGAAGAGGATGAGCAGGACGACGGCAAAGACGCTG
GTGATGCCGGTGGCGAGAAGCTCATCGGCCCCACGTTCTGGGAGGAGGTCGGCCCGATCG
TGTGCGTGGAGTCTCACGTGAGGAAGCTGGTGCTGGACCAGTTCACCATGGGCGCCAACG
AGCTGGGATTCCTCGAGTTCGTGCTGGCGAGAGCGCGGGTGCTGAAGAGGGTGGTGCTGG
TGCTGGACCCCGGGATGGCCCCGACGGCGGCGAAGGAGGCGTTGAGCAAGCTGGCGTCGC
AGCTGCCTGCGGCAAAGTGCGTCAACAAGAACGTGGAGTTCATGGGGCTCCCACGTCCAA
TGGCTGATTGGAGCTACCAGATCGCGTCTGATCTCTCCCTGAGCGACCCGTTCCCGGCTG
AAGGCGGTATATTGGTGGAGCGTCGTCAGTGAGCATCCAACACTTTGATGTTTCTCTCAA
GAACTTATTAGGAGTACTGTCCTGTTCGGTAGCCAGCCAGCGGCTATGCATGAGACTTTA
TGACTCGATCGTGTCTTCTACCGTATCATGCTGTATTTCCGTACGTAACTAGCTGCTTCT
TTTTGCTGTGACTCGATTGCACGTGTTGCGATCTACTCCTTTCAAATGTTACAGTCACGC
GACATTTTATCTATGGTTTGATTTATGCTGGCTACGATGAAATCAGAGATTGTCTCTCGA
AAAAAAAAAAAAAAAA



Homology of Contig U35_25059 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None