barSeed - Barley Seed Development Database

Probe CUST_27968_PI390587928

Source Contig U35_37037

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27968_PI390587928	Hv_44K_v2	AAACTTTGCGATTGCTGCTGCTGAGGCTGGCGATCCATTGACATATTAAGGGATGTACAA	342	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.168	0.167	0.651	1.317	1.530	1.631
Raw	35.059	49.357	186.561	534.469	230.838	276.618

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC32630	641	3e-25	343 - 402	100	60 / 60	plus
Harvest35	U35_37037	641	3e-25	343 - 402	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_37037 641 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTCGGACAAAAGCTTTATTCAGAAACAGAGGTTTATTATTTC
CAAGTTGCAATAGTACCGGCCACACATGATGACGTATGGCACTTTTATTTTGTAGCTCTT
CATCGATCAACTAAACGGTGATCGATCTAGCTAGCACATCACAGATCTTAGCAGACACCA
CCGGCACAGGTAGCTGCCATGGGGATGCTGTAGATGGTGGGGGTGATGGTGGTGCACGGG
GTGGTGGTGCAATATTGCGGAATGTTCACGCTGCACATCGACGGAAGGGTCTGAAGCACC
ATCCTTATTATCTCAACCGGAACCTGCTGCTGAGGCTGGCCGAAACTTTGCGATTGCTGC
TGCTGAGGCTGGCGATCCATTGACATATTAAGGGATGTACAAGCTGCCAAGGAGCGTGGC
AAGCCATATGTCGTTGTTTTTGTTGGAGTGAATGGAGTTGGAAAGTCTACCAATCTTGCA
AAGGTTGCTTATTGGCTTCTTCAGCATAACCTCAGTGTCATGATGGCAGCATGTGATACC
TTCAGATCTGGTGCTGTTGAGCAGCTGCGGACTCATGCTCGCAGGCTTCAGATACCTATA
TTTGAGAAGGGATATGAGAAGGACCCAGCAGTTGTGGCAAA

Homology of Contig U35_37037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None