barSeed - Barley Seed Development Database

Probe CUST_27961_PI390587928

Source Contig U35_37298

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27961_PI390587928	Hv_44K_v2	AGGTTGGCAAAGCAGCGACTACTGATGATCAAGGGTTGCATTATGATCTGCAGAATGGAT	373	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55658.7	880	7e-23	23 - 82	98	59 / 60	plus	ABC42998
MLOC	MLOC_55658.3	4453	7e-23	2559 - 2618	98	59 / 60	plus	ABC42998
MLOC	MLOC_55658.5	2192	7e-23	2095 - 2154	98	59 / 60	plus	None
MLOC	MLOC_55658.6	1764	7e-23	1677 - 1736	98	59 / 60	plus	None
MLOC	MLOC_55658.4	3426	7e-23	2555 - 2614	98	59 / 60	plus	ABC42998
MLOC	MLOC_55658.1	4193	7e-23	3353 - 3412	98	59 / 60	plus	ABC42998
MLOC	MLOC_55658.2	3804	7e-23	3223 - 3282	98	59 / 60	plus	ABC42998
JLOC1	JLOC1_35933.3	3129	4e-23	2264 - 2323	98	59 / 60	plus
JLOC1	JLOC1_35933.2	3329	4e-23	2464 - 2523	98	59 / 60	plus
JLOC1	JLOC1_35933.1	3365	4e-23	2500 - 2559	98	59 / 60	plus
Harvest21	ABC33072	439	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_37298	439	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (439 bp)

>U35_37298 439 Hv_44K_v2
GGGANGGAAGTCCTTACTGCAGGTACAACTCCTGCTTTTGCAAGGGATCAACTTAGCTTA
GGAATCAGTGGTGGAAGTGTTGGCATGGGTGCTAGTGACGAGGCTGAAATTCATGGCATT
GATGTATCTGTGCAAAGAACTGAGAGTGGTGTAGGTGATGCAGAACCTATTACTGACCTT
ACTGAGACAATGGGCCATACCGGTGAATCAGTTCCAGGGCCTGGATTGATGGATGAGTTT
GTACCTGAAGAAGTTGACCGGGAAGAACCTCATGGAGACAGCCAAGATATTGTGTTCCGT
TCAGCAGGCCGTGCTGACAGCGGATCAAAATATTTTGGTTCTAATAAAGCTGATTCTGGT
GAGAGTGGAAAAAAGGTTGGCAAAGCAGCGACTACTGATGATCAAGGGTTGCATTATGAT
CTGCAGAATGGATTGGGAG

Homology of Contig U35_37298 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57160.1	944	4e-63	protein\|zinc ion binding protein, putative, expressed
Brachypodium v1_2	Bradi1g06480.1	958	6e-69
Arabidopsis v10	None