barSeed - Barley Seed Development Database

Probe CUST_27958_PI390587928

Source Contig U35_49271

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27958_PI390587928	Hv_44K_v2	GATATATCACACCACAAAGAGTTGTAATGAGAATATGAAATGGGGAGTTTCTTAAGTGAC	51	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.340	0.461	0.861	2.302	1.526	1.676
Raw	14.342	30.507	50.212	211.860	50.143	58.116

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376104	2862	2e-24	2802 - 2861	100	60 / 60	plus	ABC04984
Harvest35	U35_49271	477	3e-25	52 - 111	100	60 / 60	minus

Contig Sequence (477 bp)

>U35_49271 477 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTAAACAAACCTTGAAATTGAAGAAAATAATTAGTCACTTAA
GAAACTCCCCATTTCATATTCTCATTACAACTCTTTGTGGTGTGATATATCACATCCTAA
CAATCTTCAACTAATTCTAACATTGGTTCCTGGAAAAATATAAATAAAAGCTGAAGAAGG
AGCAGCAGCAGTAGCAGATATCCAATATGCTCCCTCCGTTCCTAAATATAAAATGTTTCA
GCTTTTCTCTATTTTCTCAGATTCTTATGCATCTAGACGTGTTTTAGTGTATACATTCGC
TCATTTTAATCCGTATGTAGTCCATATTGAAATATCTATAACATCTATAATTAGAAACGG
AGGGAGTAAATAAAATGCATGGACGGGGCATTCATCTGGAGAGTGGCCATGTCTCCAGAC
ATCGCAATCCACTACCAAACTTGTAAAAGATACCATGACGAAGCGTCAGGGCGGCAA

Homology of Contig U35_49271 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None