barSeed - Barley Seed Development Database

Probe CUST_27953_PI390587928

Source Contig U35_49276

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27953_PI390587928	Hv_44K_v2	CCTGTCAAATTTCAACTATAGGTTGTATAATGGTGGAGTTACACTTTTTCCGTTTCCCCA	15	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.501	1.649	1.267	0.825	0.435	0.312
Raw	33.596	60.237	38.998	41.435	6.731	4.462

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_49276	351	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (351 bp)

>U35_49276 351 Hv_44K_v2
TTTTTTTTTTTTTTTTGGGGAAACGGAAAAAGTGTAACTCCACCATTATACAACCTATAG
TTGAAATTTGACAGGCCTTACAATTACAGTTACTCCTATTCGGCAAAACAGCATGCAATC
CAATAGTCTGCCCTTCCTTGCTGGAATAAGCTTACTTGATATTTCTTTTGGCAAGTTGTG
GGAAGCAAATATCATCTCCAAGAAGCATTACTTCAGGGGATTTCTGTGAGGTCAAGGTAT
GTTGGAACTGAATTCCCAGCATCTCGGATAACTTTTCACCATCTTTTGTCATGCACCAAG
CTGTAAATTTGTGTGGAGCTTCCACATATAACCCAAAACATAAGCTATGTT

Homology of Contig U35_49276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None