- Probe CUST_27948_PI390587928
- Source Contig U35_49282
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27948_PI390587928 | Hv_44K_v2 | AACGTTATAAATCATCAGGCGTGGCTGTGTCATCAAAGAAGACTAAATTCCCCGTTTAAA | 14 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.060 | 3.024 | 1.358 | 0.552 | 0.189 | 0.228 |
| Raw | 796.144 | 946.423 | 367.664 | 237.813 | 28.138 | 37.002 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57482.1 | 3909 | 3e-21 | 10 - 66 | 98 | 56 / 57 | minus | None |
| Harvest35 | U35_49282 | 448 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (448 bp)
>U35_49282 448 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAACGGGGAATTTAGTCTTCTTTGATGACACAGCCACGCCTGA TGATTTATAACGTTTCCCTTCACAAAAAAGAGTCAAAACCGCGAATTTAGTCTTCTTTGA TGACACAGCCAGCCACATCGTCCTTGTCCCCTGCATATCCCCACCATAGCCGGCACTGTG GCCGGTGACCGTGTCTCCGGCTTGGCTTGGTCGGTCGCCACATGCGAAAAACCGACAGAC ACACCTCGCATTTCCAGGCTACCCAGGAGCAGATGTGGATTTCTTTCAAAGTCCAGCCAA CGATTTTACCACTGAACAAAACAACCAGTCCCGAAGTATCGCAGCCATTCTTCCTAGTAT GAGCAGCTGGAGCATTCCTTTCCAAATGAATAAGGAAAAAATACACGAGGAAGCAAAGCA ATAATACCGTGAACAGTGTCCGGCGCTC
Homology of Contig U35_49282 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |