- Probe CUST_27947_PI390587928
- Source Contig U35_49283
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27947_PI390587928 | Hv_44K_v2 | CCGGCTGTTGATCAAAGGGTACCTTGTATGGGTCACGTGAGAAATATTGGAACCTTTAAA | 14 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.808 | 3.321 | 1.301 | 0.629 | 0.263 | 0.228 |
| Raw | 84.057 | 153.108 | 52.154 | 41.317 | 5.028 | 4.321 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53551.1 | 2216 | 3e-22 | 60 - 118 | 98 | 58 / 59 | minus | None |
| JLOC1 | JLOC1_34422.1 | 2194 | 1e-22 | 2097 - 2155 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_49283 | 464 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_47118 | 731 | 5e-23 | 68 - 126 | 98 | 58 / 59 | minus |
Contig Sequence (464 bp)
>U35_49283 464 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAGGTTCCAATATTTCTCACGTGACCCATACAAGGTACCCTT TGATCAACAGCCGGATAAAACTGCGTAGTAAGTCCATTCGGTTCAGCTATCCATAGTTGA TCAAGCTACAGAACAAGCAAATAGTAAGTCCATTCGGTTCAGCTATCCATAGTTGATCAA GCTACAGAACAAGCAAATAGTAAGTCCATTCGGTTCAGCTATCCATAGTTGATCAAGCTA CAGAACAAGCAAATAGTAAGTCCATTCGGTTCAGCTATCCATAGTTGATCAAGCTACAGA ACAAGCAAAGATTACACATATGCTACATCCATGGTCGCTGATTGTTTTTGTGGCCAGGTT ACACGAGGAACATCCCTACATACACGGCTACATGTAGCTAGGTTGAGTTGTTAAAACGGA GAAGGATTAATCTGAGTCTGTCTGTTGCCTGCTTGGTCGCCGGA
Homology of Contig U35_49283 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |