barSeed - Barley Seed Development Database

Probe CUST_2793_PI390587928

Source Contig U35_10866

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2793_PI390587928	Hv_44K_v2	ACAGGCATCACACATTGCATCCATAGAGGCAGATCATGCAAAGAAAATTGGAATGTTAGA	1113	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75716.1	2317	2e-24	1044 - 1103	100	60 / 60	minus	ABC13348 ABC20692
JLOC1	JLOC1_50502.1	2266	8e-25	1161 - 1220	100	60 / 60	plus
Harvest21	ABC26579	1233	3e-25	1114 - 1173	100	60 / 60	plus
Harvest35	U35_10866	1233	3e-25	1114 - 1173	100	60 / 60	plus

Contig Sequence (1233 bp)

>U35_10866 1233 Hv_44K_v2
GCGGAAAGGGGAGGAAAGGCGGCCGCTTTTCCCCGCACCCACAACGGCGGCGGCACCGCG
GCAGGAAAGTGGCGTGCCTCCAAATTCCAACCTAGCAAACATGGCAGAGATCTTGGATGT
GCCAATCAGTGGCACCAATGGAAGTGCCACTGTTCAAGCTGAACAGAGCTTGAGTGTGCC
ACTCAGGGACACCAACGGAAGTGCCAGTGTTCACGGTGAAGAGAGCTTGGATGTGCCAGT
AAGTGATACCAATGGAAGCGCCACTGTTCAGGATGAAACTTCTTCGGAAGGAAATGAGTT
AATCATCGTGGATGAGATGGACTCCTTGTGGGATGATGTAAATACCATGGTTGATATCTC
AACATTCGTGACGTACTCTGTCATCAAAGGGTTTGTAAAAGATGCCGAACAAGAAATAGG
TCAGCAGCTTGCTTCCAAGGATGAAGAGATAAGGTTGCTGAATCAAAAGCTGATGCAGCT
TGGAAATGGCAGCCTAAGTTTGTCTGGGGGTCGGGATAGAAAATATGATGAAGTTTATAG
TATCCGCCAACAGCTTCATGCCATTTCCAAGTCACTCTTGAATTCTGAGTGGGGTCTTTC
GGGGTCCCAGTATAACTTTGATGGTGCAGATGATGTGAGTAAACTTAGAGACAATGAACA
TTCCTCCAGAAATGGTTCTGCAAAGGTTGAAAGTGCTGGAGCCTCTCCTGATGCGGCTTT
CGCTGATGCGTCATGTTTGAAGCACTTGGATAGGGATGCTTTGATAGCCCATTTTAATAA
AGAGATGAATACTATGAAAAGGATGCATGATAAAGTCGTGGAAATGAAGACAGAAGAGAT
ATTTGCACTCAAGCGAAACCTGCTAAACAAAGAAGGATCCAACCCATGGCATTTACGGAA
TAACAAAGAATTCGAGCAGATTAGAAAGAAAATTGGGGAAGTTATGACAAGATTGGATGG
CCTTCTCATGGAGAATAATAAGAGAACCACTTCTGGCGTCAAGGCAGAAACATTTGCTGG
CCAACAAGACAAGAAAAATGTTTTAGATTCTGAAATCCAGCAAATACAAGGTGCTGCCAC
TAATAATCAAGTAGAAGTGTGTGCTTTTCCTACACAGGCATCACACATTGCATCCATAGA
GGCAGATCATGCAAAGAAAATTGGAATGTTAGAGTCTGATATTGAAGAAGCCAGGATGGC
AACCATGATTAGAGAAGAGATAGAGATGATTGT

Homology of Contig U35_10866 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04810.2	614	8e-106	protein\|myosin heavy chain-related, putative, expressed
Brachypodium v1_2	Bradi2g08410.1	701	2e-148
Arabidopsis v10	None