- Probe CUST_27936_PI390587928
- Source Contig U35_49297
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27936_PI390587928 | Hv_44K_v2 | TTTTTATCTGCGGTGGCCCATAACGATTCAGAAATTTGTGGTCACTACGGACCCAAAAAA | 11 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.865 | 1.668 | 1.179 | 0.746 | 0.367 | 0.377 |
| Raw | 3156.513 | 4351.533 | 2716.537 | 2667.126 | 469.611 | 528.606 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_49297 | 108 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (108 bp)
>U35_49297 108 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGGTCCGTAGTGACCACAAATTTCTGAATCGTTATGGGCCACC GCAGATAAAAATAACAACGAGGTGGACCATGGCCATTAAAAAAATACA
Homology of Contig U35_49297 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |