- Probe CUST_27928_PI390587928
- Source Contig U35_8205
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27928_PI390587928 | Hv_44K_v2 | GTGTGCGCGTTGGGTGGTCAATGGTGTTGATGCTAACGATTGTTGTCTATTTTACCTGAA | 491 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.810 | 1.768 | 1.092 | 0.694 | 0.257 | 0.362 |
| Raw | 3193.680 | 4815.847 | 2621.613 | 2536.693 | 348.236 | 523.495 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57872.3 | 1361 | 2e-24 | 1149 - 1208 | 100 | 60 / 60 | plus | ABC18001 |
| MLOC | MLOC_57872.1 | 2152 | 2e-24 | 2059 - 2118 | 100 | 60 / 60 | plus | ABC18001 |
| JLOC1 | JLOC1_37582.1 | 2259 | 8e-25 | 2078 - 2137 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC18001 | 550 | 1e-24 | 492 - 550 | 100 | 59 / 59 | plus | ABC18001 |
| Harvest35 | U35_8205 | 551 | 3e-25 | 492 - 551 | 100 | 60 / 60 | plus |
Contig Sequence (551 bp)
>U35_8205 551 Hv_44K_v2 AATTCCCGCTTCTACAGTTTTGAAACAGTCTCTTAAAGCTGGGGATGATNCCGGTGACTG CATTTATCGCTTCTTCTGAAGCAGCATCAGTTGGCGCTGAATCCACTAAACAAATGCAAG CAAAGGCAGGACGGTCATCGTACATCTCTCCCGACCACCTGGTTTCAATTCCTGACCCAG GAGCAATGGCTGCAGCTGCATGGTACCGAGCTGCAGCGCTTTCGGTGATGAACAAGCTGC ATGCCTCGGAAAGCTAGTAGTAGTGCATGGTATGCCTCTCTTCACAGTTCAAAATACTAT ACTGACGGCGAAATCCTCAGGGGCCTTTGTCAATCCCTCTGATTTGATTTCCGCTTGTGC TTTTGCATGGGCCGAGAAATCGAGTTCCGTATTGTTTTGTGCTGAGAGCAGTTCAAAGGA TTTGTAGACTTTTACAAAGGTTGAGTTAAACTGTGATTTTGGCTTGCTGGTGAAGTGATG CTTATCTGTGCGTGTGCGCGTTGGGTGGTCAATGGTGTTGATGCTAACGATTGTTGTCTA TTTTACCTGAA
Homology of Contig U35_8205 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |