barSeed - Barley Seed Development Database

Probe CUST_27926_PI390587928

Source Contig U35_8207

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27926_PI390587928	Hv_44K_v2	GATCGCACCATTTTGTTTCCTGCTCTCCAAAGAGCCAAACGGGAAGTGGAAATAATGTAC	702	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54276.1	3842	2e-24	252 - 311	100	60 / 60	minus	ABC16755
JLOC1	JLOC1_34929.1	2107	8e-25	124 - 183	100	60 / 60	minus
Harvest21	ABC16755	762	3e-25	703 - 762	100	60 / 60	plus	ABC16755
Harvest35	U35_8207	762	3e-25	703 - 762	100	60 / 60	plus

Contig Sequence (762 bp)

>U35_8207 762 Hv_44K_v2
CGGGCTGCAGGAATTCGTCACGAGGGGGGTTGGCGANNCTTGGAAAAATCATGCGCTACA
AAGTCTTGCACTTGCTCTTTCTGTCTTAAGGCTGCTTTTATGTGGACTGATCTCCATTAT
CAGGATGCAAGAAGTCGGCTTGGTGCATTGAAGAAGAGCATAAAGTTTGCTAGATCGCTA
GAGGCAAAGAGGCAAGGAAATGAATTCAGTGCAGACAGATACTCGCAAAGAGCCGCACAG
ATGGGATTCGAACTATCTCAACAACAGAGATCACTCTTTCTTCATACTGAAAATGCCCTC
GTTCGTGAATCTGCCCAGCTTCATTCAGCTGTTGTCAAGTTAAAGGACCTGAGAGACAAC
TGCAAGAAAGATCTAAAGATCTGATCATCAATTCTTTGCGAAGGCGAGTCCTGCATGATT
GTGCTCTGGTAAACTTGTTGCCCTGGGGTGTAGTAGGATAAGCCGGATTCTTTTGAATCA
AGATGTGTATGGTGTCTGCCTGCCAAGTGCCAACTAGAAAGTTAGGGGGTTATCAAGTAG
GGAATTCGGGCGTAGTGATTACTCCTAACTTAAACATAGGCCAACATCTTAGCCTCTGAA
GATCGTCTAGGAAATGCTTCTGTAAAAATCTTAGTGGGGGAGTCAGGAACTGTAGGTTTG
TGACAGGAGTCCATTCAGTAGCTCAGTTGTACCTGGCTGTGAGATCGCACCATTTTGTTT
CCTGCTCTCCAAAGAGCCAAACGGGAAGTGGAAATAATGTAC

Homology of Contig U35_8207 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g59010.1	325	3e-53
Arabidopsis v10	None