barSeed - Barley Seed Development Database

Probe CUST_27922_PI390587928

Source Contig U35_8211

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27922_PI390587928	Hv_44K_v2	AAATAGCTTTCAGCATGCTAATTCTGCATAATTGTGAGTGCTGTTATTCTGGCATGAGTG	605	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5049.1	5990	7e-23	181 - 240	98	59 / 60	minus	ABC20233
JLOC1	JLOC1_3216.1	5868	4e-23	5759 - 5818	98	59 / 60	plus
Harvest35	U35_8211	686	3e-25	606 - 665	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_8211 686 Hv_44K_v2
TTAAGGATGGTGTTTTGATGCCACAAGATCTCACTGCAGGGACCACACTTCATTGCAACT
TTAAAAGATTATGTGTTTGCTCTCTACCAGGAACGATTTCTATGCTCGTTCAGATCCCCA
GTTGATGTGATCATGTGGGCAGATAAAAATACAATGTGTTGTCCAATGCTAAAGATGCTG
CAGTTTAGGATTTTTGCTCTGAGCTGACCCACTTCCAGTTCTGTACATACCACAAGATTA
GCAAGTCTTCTGCTTCTCATCCTCGATGCAACTTCATGCTAGCCTTCTGCAAATAAATCT
CCTTTATCGGTTATGATTGGCAGTGGAATGCGTTCTTGCGTATCGTTGTGAGATATGGAT
TGGTTGAAGAGAAGTGGAGCAATTGATCTTCTGTTAATTAAGTGTGTCTGCTGTAGACAA
GGACTGCTGTTACTGATGTTGGAATCTGTAGAACTAGATGAATGATGATGCCTTCTCAAA
TCTCACTGTATTATGTATTACAACTCAATTAAGCCATCAAGGTGAAACAAGGTTCACAAA
TATTAGCAGGTTTGAGTGTTACATTCAGACTACTCACCGACTTGCTGGTATGCTTTGTAA
TGAGCAAATAGCTTTCAGCATGCTAATTCTGCATAATTGTGAGTGCTGTTATTCTGGCAT
GAGTGAAATTAAAAAAAAAAAAAAAA

Homology of Contig U35_8211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None