barSeed - Barley Seed Development Database

Probe CUST_27920_PI390587928

Source Contig U35_8213

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27920_PI390587928	Hv_44K_v2	TGGCGATAAGGCTACTGCCACGAGTGGGGAGAGCAGCTCGTCGTCTCCTAGCAATCCACC	29	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61940.1	1937	2e-24	384 - 443	100	60 / 60	plus	ABC22128
JLOC1	JLOC1_40506.1	1592	8e-25	1372 - 1431	100	60 / 60	minus
Harvest21	ABC20729	564	3e-25	30 - 89	100	60 / 60	plus
Harvest35	U35_8213	733	3e-25	30 - 89	100	60 / 60	plus

Contig Sequence (733 bp)

>U35_8213 733 Hv_44K_v2
AGTTACGCGCCACCACTGACCACTGCCCATGGCGATAAGGCTACTGCCACGAGTGGGGAG
AGCAGCTCGTCGTCTCCTAGCAATCCACCGGCGGCGCGCATGGCCGCCTTGCTCCACGTA
GCGGCTCTCCATCCACCTCGCCCCGCCCCAAACCCCCATCATCCATGGACGCACAGCCGG
GCCACCACGCCCATCCTCTCCCCACATGACGCAGCGCCGTCCAAGCGACGACGAGCTCCA
GCCCGGCGGCTACACGCGGCCAGCAACGGCAGCGGCGTCGGCACACCACCAGCCGCGGAC
AGCAGGAGCGGCAAGAAGCCGAGCCGCAAGGAGAAGCAGCGGCAACAGCAGCGGGTGCGG
GAGCGGGAGGAGCAGCAGCAGCTCCTCCTCCTCAAGGAGTCGTTCGTGGAGGCGGCCCGC
GAGGAGGAGCAGGAGGACGGCGGCGGTCGCGGCGACGACGAGCTGCCGCAGGTGGTGTTC
GACCGCATCCTCCGGCGGATCCTGTTCACGGTGGGCGTCCCGATGGCGTCCGGCGTGGCC
CTCCTCAACGTGTACGACGCGCTCAAGCGCGGGGGCGGCGCTGAGGTGCCGTCGTGGGTG
CAGCTGCTCACCATCCTCCTCTCCTTCGGCACGTCGGCGCTCGGCATCGCCTACGGGACG
CTGTCGGCGAGCTGGGACCCGGAGAAGGAAGGCTCGCTGCTCGGCGTCGACGAGGCCCGG
ACCAACTGGCCGG

Homology of Contig U35_8213 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None