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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27919_PI390587928Hv_44K_v2TCCAAGAAATGGGGAAGGCAGGCGCCCTTTGTATGGACGCCTTCAAGATTGCCATCAAGT759GeneList: orange
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.7791.1112.1362.5890.9420.907
Raw 4.97011.47721.53538.2893.5514.314



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_22011.122272e-24905 - 96410060 / 60plus None
MLOCMLOC_22011.321292e-24817 - 87610060 / 60plus None
MLOCMLOC_22011.227632e-24817 - 87610060 / 60plus None
JLOC1JLOC1_15260.221848e-25813 - 87210060 / 60plus
JLOC1JLOC1_15260.122488e-25813 - 87210060 / 60plus
Harvest21ABC167188193e-25760 - 81910060 / 60plus
Harvest35U35_82148193e-25760 - 81910060 / 60plus



Contig Sequence (819 bp)

>U35_8214 819 Hv_44K_v2
TTAAGCCCAAACACGCAAGCTCCGCTTGCCTCGCCGCCGCCGTCCATGGAGACCTCCAAA
TCGCCGCCGTGGCCCTTCTCGCCGCCGCGGGAGCCCTCCGCAGCGACGGTGCTGCTGTGC
CCTTGCCTGGTGCTCCTCATCCTCGCCCTCATCGCCACATCTATCGCCCTCACGGTCCAC
TTCCGCCTCTATTGCCACTCCCCTGTCGGCCACCTCATCTCCCCCCACCGCTGCCCGCGC
CACATCTGACCTCGGGCGTAAGAAGCAACCTCTGGGGCGAGGATGCGGGCGCGGGCCTGC
TCCCCGGCCGTGCGCTACCTCTACTGTCAGCGAGATCCCGTTCCCTCCCCGCTGCCTCGC
CGGCGTGGGGGACCGACGCGCCGTTCCGACTAGCTGGGTCAAGACGCCTCTCGACCTCCA
CGTCCTCCGCCTCCGAAGACGACGACGAGGGGCCCTCGACACCGCAGGCGCCGTCGAGCC
ACCCAGAGCACGTGGCCCGCGTGTGCGCCGCCATCGCGGACGTCATCACCTCTGGCGCCG
ACGCGAACCTGGAGGCAGCGCTCTCCGCGCTGTCGCTGCCGCTCTCCGAGCCGCTCGTGG
TTGCTGTTCTCGACCGCTTCAAGCACGCGCACAAGCCGTCTCGCCGCTTCTTCCAGTGGG
CCGCCGCATCTGGTGGGTTCGCACACTCCGTCATCACCTACTGCAAGATGTTGCAAATCC
TCGGCAAGGCGAGGCAGTTCGAGACGATGGTTGCACTAGTCCAAGAAATGGGGAAGGCAG
GCGCCCTTTGTATGGACGCCTTCAAGATTGCCATCAAGT



Homology of Contig U35_8214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None