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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27917_PI390587928Hv_44K_v2AGCTGCTGCCTGTGTCTGTCTGTCATGATCCTTTCATGAGAAACATTAGGAGTATTATCT827GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6911.5271.1660.6700.1770.146
Raw 4338.9876164.9304151.0673874.611340.301317.267



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_70611.111157e-23941 - 10009859 / 60plus None
MLOCMLOC_70611.211187e-23944 - 10039859 / 60plus None
JLOC1JLOC1_46868.211444e-23991 - 10509859 / 60plus
JLOC1JLOC1_46868.111534e-231000 - 10599859 / 60plus
Harvest21ABC479186423e-25583 - 64210060 / 60plus
Harvest35U35_82168873e-25828 - 88710060 / 60plus



Contig Sequence (887 bp)

>U35_8216 887 Hv_44K_v2
CGCTGGAGGAGGACCTCCACGCCGCCGCGCGCCGCATCGACCTCCTCAAGAACGAGTCGT
TGATGAACGCGGAGGGGATCCGGCGCTGCGTGGAGGAGAAGGAGGCCGTGGCGGCCGCGC
GGGACCAGCTCGCCGCCCACGCCGCCAGGCTCGAGAAGGAGTGCGGCCTCTACGAGCGCG
ACCTCGAGCGCGCCATGGAGTCCTGCGACGACCTCGCCAGGGAGAGCGACGACCTGCGCA
AGCGACTCAGGGACGCCCCCGACGTTACTGCACTCAACAAAGAAGTGGAAGCCCTTCAGA
GACACAAGGAGATACTGAAGACCAATCTGAACAAAGCAGAGGAGGAGGTTAAGTTGCTAT
TCGAGGAGAACAGAGCTCTGGACGAAGCGAACAAGAGGCTGATGCGCTTACTGGAGAAGG
AGCAGAAGCATCGGTCCGAGAGAAAGCACTCCGCCAGCAATTCCACCAAGAAGCGCAAGT
CGTCGAGCCTGAAGGAGACGAGCCCGGTCGGCCTGGCCATCGATTTCAACAATGCAGACG
AGTCGAGGCAGCCCCTGTCCCCCTTGCAGCCAAACTCTCCGGACTGCAGGGTGCATAAGA
AGTGAAGCCGGGCGTCCGGACATCCTGACATTCTCTTGTGGGATCGCGTAAACTGAAGTG
AAGTGAGCATCTACCCCTTAGCTAGGCATCGGGGAGGGCCGTGGCTTGCTACTTGCCTGA
TTTATATCTGACTAACTTGGTGGGTTAATTTGGTTGTTCTTGTCGGTAGAACCTCCTCGG
TTATATGTAGCCCGCGTCTTCCATCTTCCTCTTCCTCTTGTCTTGGTAGCTGCTGCCTGT
GTCTGTCTGTCATGATCCTTTCATGAGAAACATTAGGAGTATTATCT



Homology of Contig U35_8216 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g58470.12611e-82protein|expressed protein
Brachypodium v1_2Bradi3g60680.12663e-93
Arabidopsis v10None