barSeed - Barley Seed Development Database

Probe CUST_27915_PI390587928

Source Contig U35_8218

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27915_PI390587928	Hv_44K_v2	TGCTGACTTGTGTGTAGAAAAAACAAGAAGGCATTGCATCTTGGTGCCCAGAAGTGTCGA	249	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62327.2	1995	2e-24	221 - 280	100	60 / 60	minus	ABC20205 ABC20531
MLOC	MLOC_62327.3	2323	2e-24	173 - 232	100	60 / 60	minus	ABC20205 ABC20531
MLOC	MLOC_62327.1	2311	2e-24	238 - 297	100	60 / 60	minus	ABC20205 ABC20531
JLOC1	JLOC1_40786.2	2496	8e-25	2020 - 2079	100	60 / 60	plus
JLOC1	JLOC1_40786.1	2471	8e-25	1995 - 2054	100	60 / 60	plus
Harvest21	ABC20531	599	3e-25	319 - 378	100	60 / 60	minus	ABC20531
Harvest35	U35_8218	627	3e-25	250 - 309	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_8218 627 Hv_44K_v2
CTAAGAAGATGAGACGGGATGTAGCTGCCATGGAGAAGGAGGTGGTGGCTATGCGATTAG
AGAAAGAGCAGGATACGAAAGCAAGAAGGTTCGGCAGTTCAAGCGCCTCTGCCTCACAGG
TGCCACCTGGAAGGACTCTGCCTCGGAGCGGTTCAGCACGCAACATGTGATGCTGCTGAT
ATGAAGCATTAAAAAGACCTTGGAGCACCTCCTGTGTAGTTAGTTGAATGATGGCATCCA
GGGACCCTCTGCTGACTTGTGTGTAGAAAAAACAAGAAGGCATTGCATCTTGGTGCCCAG
AAGTGTCGAGCCTGAGCCTGAGCCTGATCGATCGTGCCTGCTACATCTCGTGGTCGCGGA
AATCAATCAATCAGCGACTCGGGTCGAGTGAAGTTAGTGTCGTTGATGAGATTTGGCGGT
GTTTTTATTCATTTCCTGTCGTGGAACCGAAAACACTTTGTTGTATAGGTATGGTGTGGC
CTTGCAATCTTTTTTGTTTGTAATCCTACCTACTCCCCAAGAGCTTGTGTGGTGTTTTAT
GCTAGCCAAGTTGTTTGTGAATAATAACATGATGATGATGATGATGATAGTGCAGTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_8218 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None