barSeed - Barley Seed Development Database

Probe CUST_27911_PI390587928

Source Contig U35_8224

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27911_PI390587928	Hv_44K_v2	TGCTGATAACGTGTGATAATACAGATTGATCGAAGTATCTCTTTCATTGATGATCCAAGG	793	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.064	0.054	0.977	1.919	1.158	1.414
Raw	3.058	3.104	107.520	323.735	66.954	94.402

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_41024.1	524	6e-24	421 - 479	100	59 / 59	minus	None
MLOC	MLOC_6931.1	879	7e-23	602 - 661	98	59 / 60	minus	None
Harvest21	ABC17229	429	3e-25	349 - 408	100	60 / 60	plus	ABC17229
Harvest35	U35_8224	874	3e-25	794 - 853	100	60 / 60	plus

Contig Sequence (874 bp)

>U35_8224 874 Hv_44K_v2
CTGCGCTGCAGCACGGCGCGCGGCACTATGTGCCAGCGGCGGGGCGCCGATGGGCCAGTG
AAGCTGCTCGCCGAGTTGTCGAAGACGTCCCCTAGCGCCACAGCCCGCGCGGGGAGGCGC
AGCCCGAGGCTAGCGCTCGACGAAGAAGCCCCAGCGCCGGCCGCCTCGTGCGCCGGCGTC
GGAGACGGAAGACGTGGGGAGTCCGGCTGCGCGGGCTCCGCGGGCGGCATAGGCGGCGCA
GGTTCGGCCTCCTCCTGGACCTCGTAGTCTAGTGGTGGTGACTGCGACGGAGTCACGCAT
GGCCCCCATCCGTGCACTGGGCATGGATGTGGTGGTGGAGGCGCCGCAAGTTCCGGCTCA
ACGGCGTCGACTTCCATTGCTCCGTCCACAGGTTCGAGTACTTCGTCCGCGTACAGGTTC
GGAGCAGCCGGTCCGGCAAGAATCCAGGCCGGGAGCGGCGCCGGCGCCGGTTCACGTGAA
GCACCGGAAGGCCCAGCACGTGGCGACCACGGGCGCCATGCCTAAGACGTGGTGCACGGC
GGCGGAAACCGTTCCGGCGGCCACCGAACCGGCGAAGATCACGGGCGTGGCGGTTGTGGC
GGCGAAGTCCGCCAACACCATGGCGATGGCGACGGCTCTGTCGACTTCGACCGCCGTCAC
GAACGAGGTGCAGGAAGAAGGATAGGAGACCACGAGGCATCCTCTTACCTTCTTCTTTCC
TCCCTTCTTTCTTCTTTTCCGGCGACTCTCGCCGGAGTTGTTTTACCTTTTCTCTGCTCT
CGGTAGAGTTACGTGCTGATAACGTGTGATAATACAGATTGATCGAAGTATCTCTTTCAT
TGATGATCCAAGGATTAAAAAAAATAAAAAAAAT

Homology of Contig U35_8224 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None