- Probe CUST_27910_PI390587928
- Source Contig U35_8225
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27910_PI390587928 | Hv_44K_v2 | TCTTCATCTTCTGCTCATTAGAGATTGCCCTCTTCCGTTATACTTATGGCATCTGACACA | 1098 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.781 | 1.406 | 1.540 | 1.268 | 0.497 | 0.420 |
| Raw | 13.256 | 37.285 | 36.185 | 47.550 | 5.240 | 5.946 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356712 | 2121 | 2e-24 | 1723 - 1782 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58592.9 | 2123 | 2e-24 | 1389 - 1448 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58592.7 | 2451 | 2e-24 | 1827 - 1886 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58592.5 | 1961 | 2e-24 | 1831 - 1890 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58592.2 | 2331 | 2e-24 | 1731 - 1790 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58592.3 | 2460 | 2e-24 | 1860 - 1919 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58592.8 | 2576 | 2e-24 | 1701 - 1760 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_38085.10 | 2354 | 8e-25 | 1724 - 1783 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38085.9 | 2272 | 8e-25 | 1642 - 1701 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38085.8 | 2106 | 8e-25 | 1476 - 1535 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38085.7 | 2275 | 8e-25 | 1645 - 1704 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38085.6 | 2067 | 8e-25 | 1437 - 1496 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38085.5 | 2333 | 8e-25 | 1703 - 1762 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38085.4 | 2372 | 8e-25 | 1742 - 1801 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38085.3 | 2355 | 8e-25 | 1725 - 1784 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38085.2 | 2254 | 8e-25 | 1624 - 1683 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38085.1 | 2376 | 8e-25 | 1746 - 1805 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20117 | 784 | 1e-24 | 726 - 784 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_8225 | 1158 | 3e-25 | 1099 - 1158 | 100 | 60 / 60 | plus |
Contig Sequence (1158 bp)
>U35_8225 1158 Hv_44K_v2 GGGGGTAGCTCCGTTATTGACCAGGCGAAGTAAATACAAAGGGATAATCACCGAGAGAGC AGGACATGCATATGACACCTTAGCATCAATATCAGATAAAGAGCTCAAGAAATTTGATGG TGTTGTTGCAGTGGGTGGTGATGGTTTATTTAATGAAATCCTGAATGGGCTACTAAATTC GAGGAATAAGACTTCTTATCCTCCAACTCCAGAGGGCTTTGGATATTTTGAAAGCACTGA GAAATGCCAAGGGTATAGGAACGATGGGCTAAACAACAGTACACCCACATCCGATGCTGT AAATGCCATGCTCCCTGTGGGTTCCAACAATTGTGATGATCATGAACCTCTTCTTTCGAC TGGGCAATCTGTTGGATTAGGCATCTCATCATTAAATCCAAATACAGACTCATCCAGTGG AGATCAAGTGCCCTTAGTCTCCTTCCCAAATGATTGGTTTAGGCTTGGCATAATTCCTTC TGGCTCAACAGATGCTATTGTACTCAGCACAACTGGGGAACGAGATGCTGTGACTTCTGC CCTGCTAATTATCCTTGGTAGAAGGATGTCGCTTGATATAGCTCAAGTAGTCAGGTGGAA GAGTAGCCCATCAGCTGAGGTCTTACCTACCGTACGCTATGCGGCTTCATTTGCAGGATA TGGATTTTATGGAGAAGTCATAAGGGAGAGTGAAAACTACCGATGGATGGGGCCCGCACG TTATGATTTTTCTGGAACTATGGTCTTTCTGAAGCACAGATCTTATGATGCAAAAGTGGC CTTTCTTGAGAATGAGAACTCTCTTTCACTTGCTGCATCAGCAGAGAATGTTGCAGATGA AGTACAACCACTACAATCACGTAGAAAAAGACCTCGTAAAATAATTTGCCGAGCAAATTG TTCTGTATGCAAAGAAAATTCAATGCCCGAACAAAATTCAGAAGATGAGATTCCAAACAG CTCCCAAACTATTTATGACAACCCAAAATGGGTCTGGTCCGAGGGGCATTTTCTCAGTGT CGGTGCAGCTGTCATTTCATGTCGCAATGAAAGAGCCCCTGATGGCCTAGTGGCTGAAGC ACACCTCTCAGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTTCCGTTATA CTTATGGCATCTGACACA
Homology of Contig U35_8225 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g43906.1 | 396 | 2e-163 | protein|ceramide kinase-related, putative, expressed |
| Brachypodium v1_2 | Bradi3g50590.1 | 609 | 0.0 | |
| Arabidopsis v10 | AT5G51290.1 | 608 | 1e-107 | Diacylglycerol kinase family protein | chr5:20844252-20848157 REVERSE LENGTH=608 |