barSeed - Barley Seed Development Database

Probe CUST_27903_PI390587928

Source Contig U35_8233

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27903_PI390587928	Hv_44K_v2	GAGCTTTATCTGGGCAACTTTGACCGCTGTAGAACTCTGTATGAAAAATACATCGAATGG	1052	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.198	0.958	1.565	1.245	0.821	0.592
Raw	331.791	370.641	600.988	690.038	171.508	135.285

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70394.1	2986	2e-24	1769 - 1828	100	60 / 60	plus	ABC11462 ABC11463
MLOC	MLOC_70394.2	1995	2e-24	1686 - 1745	100	60 / 60	plus	None
JLOC1	JLOC1_46714.1	3047	8e-25	1732 - 1791	100	60 / 60	plus
Harvest21	ABC18475	1135	3e-25	1053 - 1112	100	60 / 60	plus
Harvest35	U35_8233	1135	3e-25	1053 - 1112	100	60 / 60	plus

Contig Sequence (1135 bp)

>U35_8233 1135 Hv_44K_v2
ACGAGCGCGCCCTGGACGTCGCCCACCGCGACCACACCCTGTGGCTCAAGTATGCCGAGT
TCGAGATGCGCAACCGCTATGTCAACCATGCCAGGAACGTCTGGGACCGTGCCGTCTCGC
TCCTGCCCCGCATCGACCAGCTGTGGTACAAGTATATCCACATGGAGGAGCTGCTTGGTG
CCGTCGCCAATGCTCGCCAGGTCTTTGAGCGCTGGATGGGATGGCGTCCTGATATTGCTG
GCTGGAACTCGTACATCAAGTTTGAGCTGCGATATGGGGAGGTTGAGCGTGCTAGGGCAA
TCTATGAGCGGTTTGTTGCCGAGCACCCACGGCCCGACACCTTCATCCGATATGCAAAGT
TCGAGATGAAACGCGGAGAAGTGGAGCGGGCGCGGCGTGTGTATGAGCGTGCAGCGGACT
TGCTTGTGGATGATGAAGATGCAGAGGTGCTGTTTGTAGCATTTGCTGAGTTTGAGGAAA
AGTGCCGGGAGGTGGAGCGTGCTCGTGCCATATACAAGTATGCACTTGACAGAGTGCCTA
AGGGCAGGGCTGAGGATCTTTACAGGAAGTTCCTAGCATTCGAGAAACAGTTTGGTGACC
GTGAGGGGATTGAGGATGCCATTGTGGGAAAGCGGAGATTCCAATATGAAGATGAGGTGA
GGAAGAACCCACTCAATTATGACTCATGGTTTGATTACATCAGGCTGGAGGAGAGCGTCG
GGAATAAGGACAGGATCAGGGATGTGTATGAGAGGAGTATCGCAAATGTTCCTCCTGCAG
AAGAGAAGCGGTACTGGCAGAGGTATATCTACCTTTGGATAAACTATGCTTTGTATGAGG
AACTTGATGCACAGGACATGGAAAGGACCCGGGAGGTCTATAGGGAGTGTCTGAAACTCA
TTCCACACAAGAAATTTACCTTTGCTAAGCTGTGGCTGATGGCCGCACAGTTTGAGATTA
GACAGAAGAACATAAAGGCTGCAAGGCAGATTCTCGGTAATGCAATAGGTATGGCACCCA
AGGGGAAAATATTTAAGAAGTACATTGAGATCGAGCTTTATCTGGGCAACTTTGACCGCT
GTAGAACTCTGTATGAAAAATACATCGAATGGTCTNCAGCAAATTGTTATGCCTG

Homology of Contig U35_8233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g22260.2	609	protein\|crooked neck, putative, expressed
Brachypodium v1_2	Bradi1g38380.1	718
Arabidopsis v10	AT5G41770.1	705	crooked neck protein, putative / cell cycle protein, putative \| chr5:16718021-16720936 FORWARD LENGTH=705