barSeed - Barley Seed Development Database

Probe CUST_27902_PI390587928

Source Contig U35_8234

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27902_PI390587928	Hv_44K_v2	AAATGTTGCAAGGCCCGGCTACAAGCACATTGAGGAGCTGGATTTGCTGAGATTTTTCAA	1150	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.892	1.185	2.113	1.597	0.481	0.423
Raw	18.829	36.554	61.782	68.307	6.789	7.402

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357076	2565	2e-24	1488 - 1547	100	60 / 60	plus	ABC20343
MLOC	AK373808	2861	2e-24	1626 - 1685	100	60 / 60	plus	ABC20343
MLOC	MLOC_12135.1	2267	2e-24	1003 - 1062	100	60 / 60	plus	ABC20343
MLOC	MLOC_12135.2	2267	2e-24	1003 - 1062	100	60 / 60	plus	ABC20343
MLOC	MLOC_12135.5	2182	2e-24	994 - 1053	100	60 / 60	plus	ABC20343
MLOC	MLOC_12135.6	2182	2e-24	994 - 1053	100	60 / 60	plus	ABC20343
MLOC	MLOC_12135.8	1560	2e-24	736 - 795	100	60 / 60	plus	ABC20343
JLOC1	JLOC1_8126.1	2131	8e-25	1003 - 1062	100	60 / 60	plus
Harvest21	ABC17725	1233	3e-25	1151 - 1210	100	60 / 60	plus
Harvest35	U35_8234	1233	3e-25	1151 - 1210	100	60 / 60	plus

Contig Sequence (1233 bp)

>U35_8234 1233 Hv_44K_v2
CGACGCCGACATCGGCGGCGGCCCCGCCGCGCCCGCATCTCCCCAACCCCGAGAAGCCGC
CGCAGAGCCCCGCGCGCCCGCCCCTGCCCCCCGCCCAGGGCGCGCTGCTCCGCCGCCGCT
CCTCGCTCTCCAAGCCCAAATCCCGCTTCGTGGAGCCGCCGACCCCTCCGGCCCCCTCCT
CCCACCCGTCCCCGGCCCACCCGGCCTCCACCACCCAGACCCCTCGCCCCATCTCCACCC
CGCAGACCCCGGGCGAGGGCGACGACGACGACGACGTCTTCCGCAAGGACGGCGCGCCCA
CCGCCGCCTCCGCCGCCAAGTGCCGCAGCAGGGCCTGCATCTCGCTCGAGCTCGCCGTGC
TCGTCCTCTTCCTCGCGCTGCTCGTCGTCAGCCTCGTGGCGCGCCCGCTCAAGGGCTACT
TCGTGTGGGGGCTGGAGATCTGGAAGTGGTGCGTCATGGTCATCACCGTCTTCTCCGGCC
ACCTCGTCAGCCAATGGTTCATCGCCTTCATCGTCTTCCTCATCGAGCGCAACTTCCTGC
TCCGCAACAAGGTGCTCTACTTCGTCTTTGGGCTCAAGAACAGCGTGCAGGCCTGCCTCT
GGATTGGTCTTGTGCTCATCGCCTGGTCTCAGCTCTTCGACCAGGAGCAGCTGGGCCGCA
CGGCTAAGACTGCCAAGATCCTCAACTACGTCTCCAGATTCCTCGCCTCCGTGCTCATCG
CTGCGGTTATCTGGGTGATCAAGACATTTATCATGAAGGCCATCGCGTCCACGTTCCACC
GGAAGGCCTTCTTTGACCGGATCCAGGAGAGTCTGTTCCATCAGTACGTGCTGCAGACTC
TCTCGGGCCCTCCATTGATGGAGCTCGCGGAGAATGTCGGGCGGGAGCCAAGTGGGCGGG
TGAGCTTAAGCAGGGCCAAGGAGGAGAAAGGAACGCCTAAGGTGATTGATGTCGTGAAAC
TGAGGAAGATGAAGCAGGAGAGGATCTCAGCTTGGACGATGAAAGGGCTCATCACGGCAA
TCCGAAGCTCAAGGCTTTCAACAATATCTCAAAGTATTGAGAGCTTTCATGAGTTTGATG
AAACGGAACAAAAAGATAAGGAGATAAACAGTGAGTGGGAGGCCAAGGCAGCAGCCAATG
CCATTTTCAAAAATGTTGCAAGGCCCGGCTACAAGCACATTGAGGAGCTGGATTTGCTGA
GATTTTTCAACAGGGAGGAGGCAGCCTTGGTGC

Homology of Contig U35_8234 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g10410.1	746	3e-148	protein\|uncharacterized mscS family protein, putative, expressed
Brachypodium v1_2	Bradi1g46387.1	752	6e-175
Arabidopsis v10	AT5G19520.1	742	8e-89	\| Symbols: MSL9, ATMSL9 \| mechanosensitive channel of small conductance-like 9 \| chr5:6586079-6588771 FORWARD LENGTH=742