- Probe CUST_27901_PI390587928
- Source Contig U35_8235
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27901_PI390587928 | Hv_44K_v2 | CCTGTTGATATATGATGATTGTTGGCTGGTTTCCTGCCTATGAAATATTTGGTTGGTGCC | 603 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.209 | 1.421 | 1.394 | 1.004 | 0.455 | 0.380 |
| Raw | 4168.697 | 7786.347 | 6571.333 | 7201.733 | 1192.053 | 1074.386 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60426.2 | 6879 | 2e-24 | 93 - 152 | 100 | 60 / 60 | minus | ABC17350 ABC35051 ABC37315 ABC37969 |
| MLOC | MLOC_60426.5 | 7355 | 2e-24 | 76 - 135 | 100 | 60 / 60 | minus | ABC17350 ABC35051 ABC37315 ABC37969 |
| MLOC | MLOC_60426.4 | 7390 | 2e-24 | 93 - 152 | 100 | 60 / 60 | minus | ABC17350 ABC35051 ABC37315 ABC37969 |
| MLOC | MLOC_60426.3 | 7290 | 2e-24 | 93 - 152 | 100 | 60 / 60 | minus | ABC17350 ABC35051 ABC37315 ABC37969 |
| MLOC | MLOC_60426.1 | 6688 | 2e-24 | 93 - 152 | 100 | 60 / 60 | minus | ABC17350 ABC35051 ABC37315 ABC37969 |
| JLOC1 | JLOC1_39400.2 | 6904 | 8e-25 | 6756 - 6815 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39400.1 | 6875 | 8e-25 | 6727 - 6786 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37969 | 518 | 3e-25 | 415 - 474 | 100 | 60 / 60 | plus | ABC37969 |
| Harvest35 | U35_8235 | 707 | 3e-25 | 604 - 663 | 100 | 60 / 60 | plus |
Contig Sequence (707 bp)
>U35_8235 707 Hv_44K_v2 CAACATCTCAAGCAGAAGCAAGGCGGTGCTGCCGCCCCAAGACCCTGAGATGGAGGTAGA CCCCTGGACCTTGCTCGAGGACGGCACCAGCTGCCCCTCCACATCATCAGGAAGCAACAG TGCCAGCGGCATCACCCCCGACCACTCCAACCTGAAGGCGTGCAGCTGGCTCAAGGGCGC GGTCAGGGTGCGGAGGACGGAGCTGACATACATCGGGTCGCTGGACGACGACAGCTGACG CACAGCCATGCCGGCGCAGCGAGGGCGACCTGTTCTCGCGCCGGACCGAACTCTTCTCCA GTGTAAAAGAGGATGGAAACCGCCGCCTTATGGGGCGGCCCCCGTGTAGAATACCGACCG ACCTTGTCCCTGTTTTGTTGCTAGGGCGCCTCGAAGGAGCGATGGTGTACATATTGGGGG ATATTAGTCCGCTCCGCGAGCAGCGGGCCCTGTCCGTGTAGCTTAATTAATTATCCAGGT TTAGGGGGAGATGATGATGGTGATGCACCTTTAGCTGATTCGCCGAAAAGGCTCATATAT TCTTTTGGTCTAGTTGTGGTGCAAGTTGTTCTGCTGCTGCTGCTTTTAACTGAGATGGTT TGACCTGTTGATATATGATGATTGTTGGCTGGTTTCCTGCCTATGAAATATTTGGTTGGT GCCAAAAAAAAAATCTATTAAAAAATCAATAAAAAAAAAAAAAAAAA
Homology of Contig U35_8235 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |