barSeed - Barley Seed Development Database

Probe CUST_278_PI390587928

Source Contig U35_44012

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_278_PI390587928	Hv_44K_v2	AAGAGAAGAGGAAGAGTCTCGAGCATCTCTCTCTCTAACACAATCATGTATGTCCTGCAC	163	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2855.1	1205	2e-24	237 - 296	100	60 / 60	plus	ABC02395
JLOC1	JLOC1_1705.5	973	8e-25	225 - 284	100	60 / 60	plus
JLOC1	JLOC1_1705.4	1214	8e-25	236 - 295	100	60 / 60	plus
JLOC1	JLOC1_1705.3	1087	8e-25	237 - 296	100	60 / 60	plus
Harvest21	ABC41412	499	3e-25	164 - 223	100	60 / 60	plus
Harvest21	ABC02395	2203	3e-25	1044 - 1103	100	60 / 60	plus	ABC02395
Harvest35	U35_44012	499	3e-25	164 - 223	100	60 / 60	plus
Harvest35	U35_937	3146	3e-25	1426 - 1485	100	60 / 60	plus

Contig Sequence (499 bp)

>U35_44012 499 Hv_44K_v2
AGAATCCAACGTGAGCAGCTGCTTTTGGATTTCTACAATGACCATAGGTGTTTGAAGAGA
AGATACGAGTGATAGTGGGCCTGGTGATGAGGGCATCAAGACAAAGAGATTAATGCACAA
TTCTGTTCTTGATAGGTTGTACAAATTTCAAGATGTGAGAAAGAAGAGAAGAGGAAGAGT
CTCGAGCATCTCTCTCTCTAACACAATCATGTATGTCCTGCACGTGGTCCCTACACCTTT
GCTCCTGCCTTGCCGCCGTCCATCCCTGCATCTCTTCCTCAGCCTCTCGGACAGCACCGA
GCTGCGGCCACCCCGTGCTCGAGAGGATGGGACAAGCAGCCGCATGGTACGAGCAGCCGC
AACAGCCATCGATGCTGCCTCATCAACCGCGCCTCACGCCAGCATCCGTCCACCAGCTAT
GTGGAGCCGAGCGTGAGGCCCGACGACTGCCGCTACGGCGACAACCCCAACAGGCTACAG
CGCCACACCCAGTTCAAGT

Homology of Contig U35_44012 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None