barSeed - Barley Seed Development Database

Probe CUST_27887_PI390587928

Source Contig U35_8249

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27887_PI390587928	Hv_44K_v2	GGACTGCGTCGCCCTGGCGACGGGCCTGGAGGAGCTCAGGCTCTGGGGGGTGCTCATGAC	478	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68051.1	1262	2e-24	1067 - 1126	100	60 / 60	minus	None
JLOC1	JLOC1_44986.1	1321	8e-25	127 - 186	100	60 / 60	plus
Harvest35	U35_8249	538	3e-25	479 - 538	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_8249 538 Hv_44K_v2
TGTGGGCCTACTAAACCCCCCGCAGACAGACGCGCCCCCCCGCTGATCTGACCGTCTGTC
CCGATCCACCGCCATCCATGGCGATGGAGTGCGACGACTGGGGCGGCGGCGGCGGCGGCG
ACATGAACGCCGTGCCGGACGGCGTCGTGCAGCACATCCTGTCCATGCTCAGCAACGTCC
GCGACGTGGCGGCGTGCGCCTGCGTCTGCCGCCGCTGGCGCGACTGCGTCCCCTACCTCC
CGGCGCTCTTCTTCCCGCGGAACGCCTTCGACGCCGCCGCCGTCGGCGGCGGCGCCGCGG
ACGAGGCCATCGGCCGGATGGTGGCCGCCGTCTCGCGCCTCAGGGAGCTCGTCATCTACT
GCCCCTTCTCCATGGCCCGCCTCCCCGCCTGGCTCGCCATGCGGAGCGTCTCGCTCCGGG
TGCTCGAGCTACGGATGGACGCGGCCGCCGACAAGGACGCCGCGGGCGGCGGCCACCTGG
ACTGCGTCGCCCTGGCGACGGGCCTGGAGGAGCTCAGGCTCTGGGGGGTGCTCATGAC

Homology of Contig U35_8249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28120.1	429	4e-59	protein\|OsFBX330 - F-box domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None