- Probe CUST_27878_PI390587928
- Source Contig U35_8258
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_27878_PI390587928 | Hv_44K_v2 | TGATTGTCCCTGAGGATCTCGGGATACCTCTTGACCTACTTGATATGAGTGTATACAACC | 653 | GeneList: skyblue3 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.390 | 1.043 | 1.384 | 0.952 | 0.641 | 0.477 |
Raw | 252.812 | 285.622 | 343.058 | 341.701 | 87.630 | 71.723 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK363493 | 2851 | 2e-24 | 1120 - 1179 | 100 | 60 / 60 | plus | ABC15974 ABC19459 |
MLOC | MLOC_14162.3 | 1727 | 2e-24 | 244 - 303 | 100 | 60 / 60 | plus | ABC15974 ABC19459 |
MLOC | MLOC_14162.2 | 2095 | 2e-24 | 588 - 647 | 100 | 60 / 60 | plus | ABC15974 ABC19459 |
MLOC | MLOC_14162.1 | 1987 | 2e-24 | 590 - 649 | 100 | 60 / 60 | plus | ABC15974 ABC19459 |
JLOC1 | JLOC1_9655.1 | 2337 | 8e-25 | 591 - 650 | 100 | 60 / 60 | plus | |
Harvest21 | ABC19865 | 712 | 1e-24 | 654 - 712 | 100 | 59 / 59 | plus | |
Harvest35 | U35_8258 | 714 | 3e-25 | 654 - 713 | 100 | 60 / 60 | plus |
Contig Sequence (714 bp)
>U35_8258 714 Hv_44K_v2 TGGGCACGCGCCCCCGCAGCACCAGCAACAGCAGCGGCCGCCGCCGCCGCACCAGATGTA TTACCAGCCCCCACCGCCGCAGTACGGCGGGAGCAGCAATCAAGCGGCCCCTCCACCACC GCCAGTTGCTCCTCCCCCTTCGGCACCGCCGCCGCCGCCTCCGGCCCAGCCCCAGCCGAC CCCACGGGAGGCTCCGCCGCAGCCAAAGGAGCGGCAGGCCAAGGCGGCGCTGCCGAGGGT GGAGACGGAGGACGAGCGGCGATCGAGGAAGAAGCGCGAGTACGAGAAGCAGAAGCTGGA TGACCGGAAGCAGCAGCAGATGATGCGCCAGTCGCAGGCCACCATTCTGCAGAAGACACA GAAGGTGCGCGCAGCGGCGCAACAGCAGCAGCAGCCACAGCCGCAGAGCCGCCATCCCCA GCCATCAGGTGGGACTCGGGTGGCGACAACCGCGCCTCGCCCAGCCTCCGCGGCCAACAC CGAGAGGTTTGAGAATCGGCTCAAGAAGCCGACAACATTCCTCTGCAAGCACAAGTTTAG GAATGAACTGCCAGACCCAAGTGCTCAATTGAAATGGCTGCCTCTGAATAAGGACAAGGA CAGATATACCAAATACAGGGTCACGTCATTGGAGAAAAACTATATGCCTAAAATGATTGT CCCTGAGGATCTCGGGATACCTCTTGACCTACTTGATATGAGTGTATACAACCC
Homology of Contig U35_8258 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os08g06070.1 | 452 | 4e-62 | protein|ELF7, putative, expressed |
Brachypodium v1_2 | Bradi3g16550.1 | 451 | 2e-65 | |
Arabidopsis v10 | None |