barSeed - Barley Seed Development Database

Probe CUST_27877_PI390587928

Source Contig U35_8259

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27877_PI390587928	Hv_44K_v2	CCCTCCCGTCGCGCCGCCTGCCCGAGCACGCCGCGAGGCGCGTCTTCCTCCAGCTCGTCT	386	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374888	1532	2e-24	411 - 470	100	60 / 60	plus	ABC14822
MLOC	MLOC_69381.1	1726	2e-24	515 - 574	100	60 / 60	plus	ABC14822
JLOC1	JLOC1_45965.1	1630	8e-25	423 - 482	100	60 / 60	plus
Harvest21	ABC18394	806	3e-25	387 - 446	100	60 / 60	plus
Harvest35	U35_8259	806	3e-25	387 - 446	100	60 / 60	plus

Contig Sequence (806 bp)

>U35_8259 806 Hv_44K_v2
GCCAACCAGAGCGGAGCATCTCTCCCCGGCCTCCCTCGCCTCGGTGTCGCCGCCCATGGC
CGTCGCCAAGAGCAAGGCAGGCAAGCACGCCGCCCCGCTGCTCGGCAAGTACGAGCTCGG
CCGCCTCCTCGGCCGCGGCACCTTCGCCAAGGTCTACCACGCGCGCTCCCTCGTCGGCGG
GGAGGCCGTGGCCATCAAGGTGCTCGACAAGCCCGGGCTCGCCGCCACCGCCGGCATGGA
CGCGCGCGTGCTCGGCGAGGTCTCCGCCATGCGCCGCCTCCGCCACCCCAACGTGCTGCG
TCTCCACGAGGTGCTCGCCACGCGCTCCAAGGTCTACCTCGTCATGGAGCTCGCCCCCGG
CGGCGACCTCCTCTCCAGGCTCGCCTCCCTCCCGTCGCGCCGCCTGCCCGAGCACGCCGC
GAGGCGCGTCTTCCTCCAGCTCGTCTCCGCGCTCATCTACTGCCACGCGCGCGGGGTGTC
CCACCGCGACGTCAAGCCGCAGAACGTCCTCCTCGACGCCGACGGCAACCTCAAGGTCTG
CGACTTCGGCCTCGCCGCGCTCCCGGAGTCCCACCGCGACGACGGCCGCCTGCACACCGC
CTGCGGCACGCCCGCCTTCGCCGCCCCCGAGGTGCTCCGCCGCAAGGCGTACGACGGCGT
CAAGGCCGACGCATGGTCCTGCGGCGTCATCCTCTTCGTCCTCCTCGCCGGCCGCCTGCC
GTTCGACGACTCCAACATGGCCGACATGTGCAGGAAGGCGCACCGCCGCGAGTACACGCT
CCCGGAGTGGGTGTGCCAACCGGCGC

Homology of Contig U35_8259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43440.1	448	7e-138	protein\|CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g14200.1	436	3e-142
Arabidopsis v10	AT4G14580.1	426	1e-92	\| Symbols: CIPK4, SnRK3.3 \| CBL-interacting protein kinase 4 \| chr4:8367887-8369167 REVERSE LENGTH=426