barSeed - Barley Seed Development Database

Probe CUST_27874_PI390587928

Source Contig U35_8262

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27874_PI390587928	Hv_44K_v2	ATATATACAAATTGTAGAGAGAGTCGAGCTGAGCTAGGAGGAGGTCTCGGAGAGAAGGTA	213	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5165.1	2145	2e-24	1307 - 1366	100	60 / 60	minus	None
JLOC1	JLOC1_3305.1	1790	8e-25	425 - 484	100	60 / 60	plus
Harvest21	ABC20684	760	3e-25	214 - 273	100	60 / 60	plus
Harvest35	U35_8262	760	3e-25	214 - 273	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_8262 760 Hv_44K_v2
CTCTGGCATCACCACAAGTCTCGAGCTACAGCAACATAGATATATGCCCTGCCTAATCCC
TGCTACCTACCCAGCTAGCTATATACCTAGCTTCTTCTTCTCCCCTCTCCTCTCTCGAGA
TCTTGTCAATCTCTTTCTCCTCCGTCTACCTAGCTAGCTACCTCAATTGTTGCCTGATAG
GCAACGGCATCAATTAATCGAGATCTCTCATCCATATATACAAATTGTAGAGAGAGTCGA
GCTGAGCTAGGAGGAGGTCTCGGAGAGAAGGTAGTGCACAGGTATAGAGAGAGAAGCATT
TCCGCCATGGGGCTGAGGGACATCGAGATGACGCTGCCGCCGGGGTTCCGCTTCTACCCG
AGCGACGAGGAGCTGGTGTGCCACTACCTGCACGGCAAGGTGGCCAACCAGCGCCTCCCT
GGAGGAGCCGCCGGGACCATGGTGGAGGTCGATCTGCACGTCCACGAGCCATGGGAGCTG
CCAGACGTGGCGAAGCTGAGCACAAACGAGTGGTACTTCTTCAGCTTCCGCGACCGCAAG
TACGCGACGGGGCTGCGCACGAACCGCGCCACCAGGTCCGGCTACTGGAAGGCCACCGGC
AAGGACCGCGTCATCCGCAGCCCGAGGTCGTCGTCGTCCCGCCCCGGCCGCGCCGCCATC
GTCGGCATGCGCAAGACCCTCGTCTTCTACCGCGGCCGCGCCCCCAACGGCAGCAAGACC
TGCTGGGTCATGCACGAGTTCCGCATCGAGAACCCTCACT

Homology of Contig U35_8262 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g56600.1	332	1e-84	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi3g54817.1	302	2e-88
Arabidopsis v10	AT4G28530.1	352	5e-61	\| Symbols: anac074, NAC074 \| NAC domain containing protein 74 \| chr4:14090725-14094603 REVERSE LENGTH=352