barSeed - Barley Seed Development Database

Probe CUST_2786_PI390587928

Source Contig U35_22843

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2786_PI390587928	Hv_44K_v2	GTTTACGGTTCATGAGACTAGCAGCTTGCAATTCTTACCAGTTCAGGATGAAATCCGTAC	687	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.223	0.600	1.236	1.499	0.836	0.953
Raw	3.116	21.037	37.927	68.725	14.378	18.118

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70224.1	1556	2e-24	704 - 763	100	60 / 60	plus	ABC06665
MLOC	MLOC_70224.3	1088	2e-24	34 - 93	100	60 / 60	minus	ABC06665
JLOC1	JLOC1_46596.1	844	8e-25	32 - 91	100	60 / 60	minus
Harvest21	ABC18168	779	3e-25	688 - 747	100	60 / 60	plus
Harvest35	U35_22843	779	3e-25	688 - 747	100	60 / 60	plus

Contig Sequence (779 bp)

>U35_22843 779 Hv_44K_v2
CTTCCCTTCCCTCCGTGAGGGGGGGGGGCTTCGGCCGAAAAAAAAAAAAGCTCCTCCTGC
TCTGCTCCTCGTCCTCGTCCCCGGCCTCCGCTCCGCCTGGTAAGCGCCCCGAATCACACA
CGCACGCCTCCCTCCTTCCCCGGCGCGCGCGCGCGCTCGTGTCTCGGGGTTCGGGTGGGG
GGCGCGGTTCTGTTCTGGGTTTGAGCTCGTCCCCTGGATCTATGGATCCTGGTAGCACAT
ATATATGCTTGTGGGCTTGTGGCTCCTAGTTCTTGCCCGAGATGGGAGAAGATCTCGTGG
TTCATGGGGTTTAGAGACGCGCTGATTATGGCCTGGAAAAGGTTAGGGAAAGATGTGTGG
TTCTTGGTTGAATCTGTCGATAAAAAACAGGGAGTCCTGCTAGGCTCCTAGCTGTATGCT
CTAAGTACGTACTGCTGTTTTAGCAGATATTGACATATTGCTAGAGTTGCTGTTGGTTAT
AGCGATTGTTGATGAGTATTCAGGACATGAAATATTTTCCTGGTACGCATGCCATGGTCT
GTCCATTCCACGGAGCTGTTACTGAATGAAAATGGTCCTGCCGCTGTCTTTTCGTGATGA
AACGCTTATTACTTCTATTAAGAGTCAAAAATCGGGGCAACACTTCGGTGAAGTTTTCCT
GTCTCGTGAATTTGCTTTCAGTTAACCGTTTACGGTTCATGAGACTAGCAGCTTGCAATT
CTTACCAGTTCAGGATGAAATCCGTACGGGCAGTACGGAATCCGCAGGCCCGTGCTCGT

Homology of Contig U35_22843 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None