barSeed - Barley Seed Development Database

Probe CUST_27867_PI390587928

Source Contig U35_8269

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27867_PI390587928	Hv_44K_v2	AATGTGGAAAGTTCTCAGTGCATCACAATGTTGGAAGCTGTAAATGATGGCAAAGATCTT	921	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.444	1.320	1.451	0.891	0.434	0.304
Raw	30.949	45.370	42.435	42.266	6.653	4.669

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64881.3	2995	2e-24	1427 - 1486	100	60 / 60	plus	ABC05833 ABC38749
MLOC	MLOC_64881.1	2106	2e-24	1529 - 1588	100	60 / 60	minus	ABC38749
MLOC	MLOC_64881.4	1545	2e-24	780 - 839	100	60 / 60	minus	ABC05833 ABC38749
MLOC	MLOC_64881.2	2515	2e-24	836 - 895	100	60 / 60	minus	ABC05833 ABC38749
MLOC	MLOC_64881.5	1524	2e-24	713 - 772	100	60 / 60	minus	ABC05833 ABC38749
JLOC1	JLOC1_42642.2	2391	8e-25	1422 - 1481	100	60 / 60	plus
JLOC1	JLOC1_42642.1	1670	8e-25	701 - 760	100	60 / 60	plus
Harvest21	ABC19375	1166	3e-25	919 - 978	100	60 / 60	plus
Harvest35	U35_8269	1169	3e-25	922 - 981	100	60 / 60	plus

Contig Sequence (1169 bp)

>U35_8269 1169 Hv_44K_v2
GAGGAGGACGAGGAGATTGTGGCCTCCGTCGTCGCCGGGAAGGTCCCCTCCTACGTGCTC
GAGACCAGGCTCGGCGACTGCCGGCGCGCCGCGGGGCTCCGGCGCGAGGCGGTGCGGCGG
ATCACGGGGAGGCAGATCGAGGGGCTCCCGCTCGACGGCTTCGACTACGCGTCCATCCTC
GGGCAGTGCTGCGAGCTGCCGGTGGGGTACGTCCAGCTGCCCGTGGGCATCGCCGGGCCG
CTCCTGCTCGACGGCCAGCGGTTCTACGTGCCCATGGCGACCACCGAGGGCTGCCTTGTC
GCCAGCACCAACCGCGGCTGCAAGGCCATAGCCGAGTCAGGCGGCGCCACCAGCGTTGTG
CTCCGGGACGCGATGACGCGCGCCCCCGTCGCCCGCTTCCCCACCGCGCGCCGCGCCGCC
GAGCTCAAGGCCTTCCTCGAGGACCCCGCCAACTTCGATACTCTCTCCGTGGTCTTCAAC
AGGTCGAGCAGATTTGGGAGGCTGCAGGGAGTGCAGTGCGCGATGGCTGGGAGGAACCTG
TACATGAGATTCAGCTGCAGCACAGGGGATGCCATGGGGATGAACATGATCTCCAAGGGC
GTGCAGAACGTGCTGGATTACCTCCAGGATGACTTCCCTGACATGGATGTCATTAGCATA
TCAGGTAACTTTTGTTCTGACAAGAAGCCAGCCGCTGTAAATTGGATCGAGGGGCGTGGC
AAGTCTGTGGTTTGTGAGGCAGTAATCAAGGAGGAAATTGTGAAAAAGGTTCTGAAAACC
AATGTGCAATCTCTAGTAGAACTAAATGTGATCAAGAATCTTGCTGGCTCAGCTGTTGCT
GGAGCTCTCGGGGGGTTCAATGCCCACGCAAGCAATATTGTAACAGCCATCTTCATAGCC
ACCGGCCAGGATCCTGCACAAAATGTGGAAAGTTCTCAGTGCATCACAATGTTGGAAGCT
GTAAATGATGGCAAAGATCTTCACATATCTGTCACTATGCCCTCTATTGAGGTGGGCACA
GTTGGTGGTGGGACTCAGTTGGCGTCACAGTCTGCATGCCTGGACCTGCTGGGCGTGAAA
GGAGCCAACAGGGAATCGCCAGGGTCGAACGCGAGGCTCCTGGCCACCGTGGTGGCAGGC
GGTGTTCTCGCCGGGGAGCTGTCCCTCTT

Homology of Contig U35_8269 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g40180.1	562	protein\|3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed
Brachypodium v1_2	Bradi3g40210.1	566
Arabidopsis v10	AT1G76490.1	642	\| Symbols: HMG1, HMGR1, AtHMGR1 \| hydroxy methylglutaryl CoA reductase 1 \| chr1:28695801-28698206 FORWARD LENGTH=642