barSeed - Barley Seed Development Database

Probe CUST_27866_PI390587928

Source Contig U35_8270

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27866_PI390587928	Hv_44K_v2	CTGGGGATATACGAACTGTGTGTCATCACCGTTTAAATCTTCTAGAGCAAAAATTTAATC	731	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50786.2	2703	7e-23	1809 - 1868	98	59 / 60	minus	ABC09046
MLOC	MLOC_50786.3	2817	7e-23	1927 - 1986	98	59 / 60	minus	ABC09046
MLOC	MLOC_50786.4	2824	7e-23	1934 - 1993	98	59 / 60	minus	ABC09046
MLOC	MLOC_50786.1	2765	7e-23	1870 - 1929	98	59 / 60	minus	ABC09046
JLOC1	JLOC1_32393.1	2824	4e-23	837 - 896	98	59 / 60	plus
Harvest21	ABC45462	509	3e-25	450 - 509	100	60 / 60	plus
Harvest35	U35_8270	791	3e-25	732 - 791	100	60 / 60	plus

Contig Sequence (791 bp)

>U35_8270 791 Hv_44K_v2
TCGCCGCACCCTCCCCATCCCGCCCGGGCTCCCGCCTCTCCACACCGGCCGAGAGGGCAA
GCCCACTATATCTCCAGCTTCGAACAAAAGACTTGGGTCTCTCGTTAGACCAACGACGCC
AAAATCCTCTGTTCCTGCTGTCAGCGCGTTTGAGAGCATCGAAGATTCAGATGAGGATGT
TGACCTCGAGCCGGATTCCAAAAATGATGATGCTGTTTACGCCGGCACAAATGGGGCTAT
TGGATCAGACCCGGTTCCTGTTAAAGCGGATCAGAATGGGGACATATCATCAACGAGCAT
GATTAGATCTCATAGTGCAACTGGCAGCCTGCATGGGATCCAACTAAATCCAGTTGCAGC
TGATATACTTCGAAAGGAACCTGAGCATGAAACTTTCAGTAGGATCAATATTACAGCTGT
TGAAACTCCTTCTCATGATGAAATAGAAGCGTACAAAGTTCTTCAGAAATGTCTTGAGCT
ACGAGAGAAGTACATCTTCAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATTATAACTGA
TCCTAGTACCCCCAAACCTAACCCAAACCCGTTCAATTATGAACATCAGATCAAAACTGA
CCATCATTTCGAAATGGTTGATGGTGTTGTTCATCTGTATCCTAGTAAAGATTCTAAAGA
AAGATTATATCCTGTTGCTGATGCGACCACTTTTTTCACTGATATGCATTATATCCTTCG
TGTGTTGGCTGCTGGGGATATACGAACTGTGTGTCATCACCGTTTAAATCTTCTAGAGCA
AAAATTTAATC

Homology of Contig U35_8270 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g49270.2	816	9e-149	protein\|AMP deaminase, putative, expressed
Brachypodium v1_2	Bradi1g16620.1	832	3e-168
Arabidopsis v10	AT2G38280.1	839	9e-96	\| Symbols: FAC1, ATAMPD \| AMP deaminase, putative / myoadenylate deaminase, putative \| chr2:16033767-16038793 REVERSE LENGTH=839