barSeed - Barley Seed Development Database

Probe CUST_27863_PI390587928

Source Contig U35_8273

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27863_PI390587928	Hv_44K_v2	TTTGCTCAGGGAGATCGAAGCTCCGTGCGGCATCTGCTACGATGCTCGGAGCAATGAAGA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361551	1114	2e-24	20 - 79	100	60 / 60	plus	ABC04526 ABC04527
MLOC	MLOC_40920.1	492	2e-24	201 - 260	100	60 / 60	minus	None
JLOC1	JLOC1_26718.1	330	8e-25	202 - 261	100	60 / 60	minus
Harvest21	ABC22990	165	8e-21	1 - 52	100	52 / 52	plus
Harvest35	U35_8273	727	3e-25	12 - 71	100	60 / 60	plus

Contig Sequence (727 bp)

>U35_8273 727 Hv_44K_v2
CACGCGTCCGCTTTGCTCAGGGAGATCGAAGCTCCGTGCGGCATCTGCTACGATGCTCGG
AGCAATGAAGAGCAGAGCTGCGGGGACATGGTTGCGTGGCTTGGCCATTCACTTCTCGAC
GGCGTCCAGCTGCCAGAGGCTGGCCGGCAAGGTCGCCGTGATCACCGGCGCGGCCAGCGG
CATCGGCAAGGCGACGGCCGTCGAGTTCATCCGGAACGGCGCCAAGATCATCCTCGCGGA
CATCCAGGACGACGTGGGCCGCTCCGTGGCGGCCGAGCTCGGCCCGGGCGCGGAGTACAC
CCGCTGCGACGTGACCGACGAGGCGCAGATCGCCGCGGCGGTGGACCTCGCCGTGGCGCG
CCACGGCCGGCTCGACGTCCTCTACAGCAACGCCGGCGTCTCCGGGTCCTCGGCGCCGGC
GCCCCTGGCCGCGCTCGACCTCGCCGACTTCGACCGCGTCATGGCGGCCAACGCGCGCTC
CGCGGTGGCCGCCGTCAAGCACGCCGCGCGCGTCATGGTGCCCCTGCGCAGCGGCTGCAT
CCTCTGCACGGGGAGCACCACGGGGATGATGGGCGGGGTCGCCGCGCTCCCGTACAGNCT
CTCCAANGCGGCGGTGGTGGGCGTGGTGCGGCTGGTGGCGGAGGAGCTGGCGCGCGACGG
CGTGCGCGTCACGCCATCTCGCCGCACGCCATCGCGAAGCCGCTGCTGGTCCGGTCGCTG
GCGAGGG

Homology of Contig U35_8273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g40250.1	301	3e-63	protein\|sex determination protein tasselseed-2, putative, expressed
Brachypodium v1_2	Bradi1g22860.1	312	2e-54
Arabidopsis v10	None