barSeed - Barley Seed Development Database

Probe CUST_2785_PI390587928

Source Contig U35_22844

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2785_PI390587928	Hv_44K_v2	AAATACAACTCCTCCAAGCGGTCAGTATCTCTCGTGCAGAAGCATCGAGAAAGCAAAAAA	795	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.310	1.194	1.196	0.885	0.419	0.400
Raw	831.488	1159.353	1020.482	1179.620	194.704	209.577

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37108.1	2305	6e-24	1757 - 1815	100	59 / 59	plus	ABC17268 ABC42123
MLOC	MLOC_37108.3	2360	6e-24	1744 - 1802	100	59 / 59	plus	ABC17268 ABC42123
JLOC1	JLOC1_23989.3	2327	3e-24	1699 - 1757	100	59 / 59	plus
JLOC1	JLOC1_23989.1	2370	3e-24	1742 - 1800	100	59 / 59	plus
Harvest21	ABC17268	921	1e-24	796 - 854	100	59 / 59	plus	ABC17268
Harvest35	U35_22844	922	3e-25	796 - 855	100	60 / 60	plus

Contig Sequence (922 bp)

>U35_22844 922 Hv_44K_v2
GTAAAGAGGGTAATTGGTCCTGCAATGCCATCACGTGAATTACTAGCTGCAGCAGCTGAA
ATGACAGAGGCTCTTAGGTGCCGGGATGCTGAATTGGAAGCTGATGATGGTTTTCTTATA
GGTCCTCCACCACCAGCCATGGTCGCTGAAGCTGCATCTGCAAATGAAGCTGAGCGATTT
GAAGAGGTTACTCGAATATTGGGTGCTGATGCAGATGCACTCTATGATGTTCTGGGCATA
AATTGGAAGATGTCGCCTGATAACATCAAGAAAAGGTATTGGAAGCTATCTCTTTTAGTG
CATCCGGACAAGTGCCCTCATCCTTCAGCACAGGAGGCTTTTGTGAAATTGAACAATGCT
TTTAAAGACTTACAAGACCCTCAAAAGAGAGGCGCAATAGATGAGAAGATACAAAAGAAA
GAAGAGATGGAACAATTCGAGGTTGAGCTTAAAGCAATGCGTGAGGCTGCAGAATGGAGA
CGATTACAAGGTATATCTCTTGAGGGCGATGAAGAACTTTTGGCAGTTCCGAAACAGCCA
GAGGCACCACCTACACGCGATGAATGGATGACTACATTGCCACCTGAAAGAAAAGCAGGA
GTACCAATGCATTCAACTACGGCCTTTAGCATGAATGGCAAAGAAGGACGTGGTGACACA
AGTGCATGGACAGATAGTCCTCTTGATAGAGCCCAGAAAGCACAACAAAACTACTTAGAA
GCCTACAACAAAGCAAAGGCAATTGCAGATGGACATGAAGAGAAGGGCAAAAGCTCAGAT
GCTTCTCTTGTGGATAAATACAACTCCTCCAAGCGGTCAGTATCTCTCGTGCAGAAGCAT
CGAGAAAGCAAAAAAAAAAAAAAGAAGCAGAAGCAACAGCGAGGGAAGGAAGAATGGGAG
GAGAACCACCCATGGAAGCCGT

Homology of Contig U35_22844 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g33800.2	392	6e-146	protein\|heat shock protein DnaJ, putative, expressed
Brachypodium v1_2	Bradi2g13840.1	592	5e-156
Arabidopsis v10	AT1G65280.1	588	2e-99	DNAJ heat shock N-terminal domain-containing protein \| chr1:24245501-24248521 FORWARD LENGTH=588