- Probe CUST_27859_PI390587928
- Source Contig U35_8277
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27859_PI390587928 | Hv_44K_v2 | ACACCGACAGTAAAGAAGATAATATATACATCGTCCTTCTTTGCGCTTGGCCCAACAGAC | 398 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.630 | 0.655 | 0.939 | 1.277 | 1.056 | 1.451 |
| Raw | 134.381 | 193.183 | 270.395 | 559.173 | 169.752 | 253.772 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373992 | 1273 | 2e-24 | 388 - 447 | 100 | 60 / 60 | plus | ABC25993 |
| MLOC | MLOC_5881.7 | 622 | 2e-24 | 146 - 205 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_5881.2 | 927 | 2e-24 | 587 - 646 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_5881.8 | 659 | 2e-24 | 415 - 474 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_5881.6 | 1261 | 2e-24 | 568 - 627 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_5881.1 | 1166 | 2e-24 | 587 - 646 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_5881.3 | 455 | 2e-24 | 211 - 270 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_5881.4 | 904 | 2e-24 | 211 - 270 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_5881.5 | 543 | 2e-24 | 203 - 262 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_3813.6 | 1227 | 8e-25 | 207 - 266 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3813.5 | 1349 | 8e-25 | 233 - 292 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3813.4 | 1470 | 8e-25 | 115 - 174 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3813.3 | 1199 | 8e-25 | 179 - 238 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3813.2 | 1760 | 8e-25 | 405 - 464 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3813.1 | 1319 | 8e-25 | 203 - 262 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19925 | 457 | 1e-24 | 399 - 457 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_8277 | 458 | 3e-25 | 399 - 458 | 100 | 60 / 60 | plus |
Contig Sequence (458 bp)
>U35_8277 458 Hv_44K_v2 GGAAAGAGTGGTTGGTTGGCTTGGCTGGATCGATCGGCTGCCCTGCTGCTGCTGCGGCGG CGGCGGCGGCCTCCGGGCGAGCAGCGCTGGGCGGGATGAGGGTGGTGGTGACGGGCGCGA CGGGGTACCTGGGCGGGCGGCTGTGCGCGGCGCTGGCTGCGGCGGGGCACGGCGTGCGGG CGTTCGTGCGGCGCACCGGCGACGCGTCCGGCCTGCCGGACGCCGTCGAGCTCGCCTACG GCGACGTCGGCGACGCGGGATCCCTCGCGGCCGCCTTCGACGGCTGCGACGCCGTCTTCC ACGCCGCCGCGTCCGTCGAGCCGTGGCTCCCCAACCCCTCCGTCTTCACCGCCGTCAATG TGAGAGGGCTTGAGAATGTGTTAAAAGCGGCCAAGACAACACCGACAGTAAAGAAGATAA TATATACATCGTCCTTCTTTGCGCTTGGCCCAACAGAC
Homology of Contig U35_8277 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g72320.2 | 312 | 2e-52 | |
| Arabidopsis v10 | None |