barSeed - Barley Seed Development Database

Probe CUST_27852_PI390587928

Source Contig U35_8285

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27852_PI390587928	Hv_44K_v2	TCTTAGTTGGTGTTTGTACATAGTATCTTATTTTTGTGATGCGACTCCTCCGCCCTCCCC	576	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.379	2.329	1.257	0.863	0.333	0.552
Raw	120.310	182.021	88.577	92.380	13.105	23.230

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369767	2455	2e-24	2333 - 2392	100	60 / 60	plus	ABC18223
MLOC	MLOC_8305.1	782	7e-23	718 - 777	98	59 / 60	plus	ABC18223
JLOC1	JLOC1_5512.1	803	4e-23	739 - 798	98	59 / 60	plus
Harvest21	ABC18223	640	3e-25	6 - 65	100	60 / 60	minus	ABC18223
Harvest35	U35_8285	641	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_8285 641 Hv_44K_v2
CATTCATGGATGAAATCAAAAGGCGCGAGAAACAAAGAGTGCAAACTGCCAAGAAGGAAG
AAAAGGACAGGGTGAAGGCCGAAGTAGCCGCTGCTGCGCAGGAATCTGCTATGCGTTTTG
AATATACAAATTTCTCTCGTACTCAGAGCGATGTTATGTTCTCTCTCGATGACTTTGAAG
CTCTGGGAAATAATGCTGGACCATCAACAAGCCCACCGGCCAGTGAACGTAAACTTTTCT
CCGATGTTACACGGCTTGGTTTCGCGTCTGCGCAAGACTCCCCTCCTCTTAGAGCTGAAA
CTGGAGACACCAATAATGAAATCACGAGGGATCAAGGGCCGGTAGCAGCGTCTTCCATGT
CCTTTGCCAGCATCCTATCTTCTACTAGAGCTGCTGCGGACAGCAGAGGTGAGATGCCTA
AACCAAATGGAGTCGGAAAGGCGGGCAAGAAGCGCACCAAGGTGCTTTTATCGACAGGCG
GTGGCCGCCGATACTAACGAAAACTACACTGGAAAACATTTGGTCATTTCCGTTGTACCT
CATGAACAATCTTGTGTATAATACGGAAGTTGGATTTCTTAGTTGGTGTTTGTACATAGT
ATCTTATTTTTGTGATGCGACTCCTCCGCCCTCCCCCCCCC

Homology of Contig U35_8285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g44347.1	745	2e-51
Arabidopsis v10	None