barSeed - Barley Seed Development Database

Probe CUST_27842_PI390587928

Source Contig U35_12814

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27842_PI390587928	Hv_44K_v2	CGGGTTTCAGACTTGTGTGTACTCGTGACCTATTCCCTGAAAAGAAAAAAGTGCAAAAAA	1129	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.066	5.917	1.388	0.918	0.495	0.422
Raw	156.107	169.880	33.533	34.695	5.820	5.693

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370722	1174	9e-22	1105 - 1159	100	55 / 55	plus	None
MLOC	MLOC_11163.3	1740	9e-22	1685 - 1739	100	55 / 55	plus	None
MLOC	MLOC_11163.2	1395	9e-22	1213 - 1267	100	55 / 55	plus	None
JLOC1	JLOC1_7369.2	1140	5e-22	998 - 1052	100	55 / 55	plus
JLOC1	JLOC1_7369.1	1381	5e-22	1239 - 1293	100	55 / 55	plus
Harvest35	U35_12814	1200	3e-25	1130 - 1189	100	60 / 60	plus

Contig Sequence (1200 bp)

>U35_12814 1200 Hv_44K_v2
GGCGCAGTCCGCACAGCGAAGCCCAGAGGCGAAAAGGGTGCCGAGCAAGGCGGCCTCTGT
TCTCGACCGCCCCTCGATCCTCCCCTCTTTACTCGGCAGCCCCCCTCGCATCCTCCAAAA
TCTCCCGTCCCCCGGTTCGTTCCTAGGTTCTCATGAGCATGGAGGTGCTACACGATACAA
CAGGGAAGAAGGAAGCGGCTGTGTACTATATGGATGCCCCCTTACCATATGCAATTGAAG
AGAATTTCGGGGGGTGCTTCTTTGAAGATGATGTTGATCTTGCACAAGTTCTTCAAGATC
AGGAAATAGTGTATCAATTAATCCAAGGAAATGATGGTAGTGGTTCATCTAGGTCACATT
CCGATCCTAGTTCTAGTTGTGGCCATCCACGGAAATCGGGTGGGCGAAGTTTAACAAGAG
GTGCAAATTATGAGTCACAGCTAGCTGTCGATGAAGCTTTAGCTAGAGACTTGCAGGCGA
TGGAGGACCAAATCGCTAAGGCAGCAATAGAAGAAAACAACAGAAAAGAAGGAAGAAAGC
CTGCAGGTTTTTCAACATCCAACAATGGCAATACTTCTGTGAGCAGATCTTCTCAGGTAT
TAACGGAGGATGGAGTTGATCCTGATAATATGACTTATGAGGAACTGCAACAATTAGGGG
AAACTATTGGGACCCATAGCAAAGGGTTGCCAGAAGATGTGATAGCTCTACTTAAGTCTT
CAACTTACAAAATTGGGATATTCTCGAGAAAGGAAAAACATGATGAATGTGTGATATGCT
GTATGGCTTACAAGAACCGCGACAAGCTGACTACATTGCCCTGTCAGCATCAGTACCATC
GAACTTGTGTTGCGAAATGGTTGAAGATCAATAAGGTATGCCCCGTTTGCAACAAGGAGG
TTTTCGGGTCGTGACAGCAAAGACCGTAGATTCATCTGACGGCCAATGTCAACATGCTTA
AGAAACATCGTCGCCTACGTAGTCCGCAAAAAAAGGGCAACACGATGTACATCATAAGAT
GAGCCGGGGCTTCTGTTGCATCGATCATCAGCAGAATAAAATAGGTAGATCCGTAGATGC
TCATGTTGAGTTTAGCTGTTGTGTGACTTGGAGTTATTGGGATTTCCCACGGGTTTCAGA
CTTGTGTGTACTCGTGACCTATTCCCTGAAAAGAAAAAAGTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_12814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48260.1	255	5e-112	protein\|zinc RING finger protein, putative, expressed
Brachypodium v1_2	Bradi5g18810.3	253	5e-123
Arabidopsis v10	None