barSeed - Barley Seed Development Database

Probe CUST_2783_PI390587928

Source Contig U35_22846

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2783_PI390587928	Hv_44K_v2	GGATACATGTAGTATTCACTTAATTCACTGATCGATCACATGACATATGTATGTACAGTC	566	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.353	1.691	1.236	1.089	0.682	1.484
Raw	3.983	43.793	26.152	32.736	7.734	18.982

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC16865	628	3e-25	567 - 626	100	60 / 60	plus
Harvest35	U35_22846	628	3e-25	567 - 626	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_22846 628 Hv_44K_v2
GGCATACGTACTGCAAATCAAGTTACCAGCTCCCAATCAGCTAGCTAGTCATCAGCAACA
TTTGTTGAAAAGGAAGAAAGATCGCACTCGATCATGGTGGTGCCGTCGGTGTTCGCGGCC
TTCGACGAGGATGGCGACGGCAAGGTGTCCGTGTCCGAGCTGCGGCGCTGCGTGGAGGCG
ACGCTGGGCGAGGACGTGTCCGAGGAGGAGGCTGCGTCGGTCCTTGCGGCGGCGGACGCC
GACGGCGACGGGCTGCTAAACCAAGAAGAGTTCTCAAGGCTGGCCGGCGGTGCCCAGGAA
GAGGACGATGCCGACGTGAAGCGAAGGTGCCTGAGGGAGGCGTTCGGGATGTACGCGTCG
TCGTCCACGGAAGACATGACGACGATGATTACGCCGGCGAGCCTGAGGCGGACGCTGAGC
AGGCTGGGGTCGCACGAGCTGGGCGTGGAGGAGTGCCGGGCGATGATCTGTAGGTTCGAC
CTCGACGACGACGGCAAGCTCTCGTTCGACGAGTTCAGGGTCATGATGATGGCCTGATGA
TCGATCTCTCTTCTTGGCATTCTTCTGGATACATGTAGTATTCACTTAATTCACTGATCG
ATCACATGACATATGTATGTACAGTCAT

Homology of Contig U35_22846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None