barSeed - Barley Seed Development Database

Probe CUST_27820_PI390587928

Source Contig U35_12832

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27820_PI390587928	Hv_44K_v2	CTTGTTTCGAAGTGTACCAGCACTTGTTGTGTTATTTAGGACTCCGTCTCTGGCAAAAAA	710	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.520	1.637	1.021	0.857	0.357	0.433
Raw	1529.010	2523.563	1420.097	1877.284	272.462	362.251

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360868	426	3e-21	303 - 356	100	54 / 54	plus	ABC25937
MLOC	MLOC_11648.1	1321	3e-21	32 - 85	100	54 / 54	minus	ABC25937
JLOC1	JLOC1_7740.1	1448	2e-21	1234 - 1287	100	54 / 54	plus
Harvest21	ABC25937	781	3e-25	12 - 71	100	60 / 60	minus	ABC25937
Harvest35	U35_12832	781	3e-25	711 - 770	100	60 / 60	plus

Contig Sequence (781 bp)

>U35_12832 781 Hv_44K_v2
AAATTAAATTCGTGTCAAAAAGCATTGGACTTGCGATGGAAGAAGTTCCAGAGGAATGCT
GGCCTTTTGAAGCGACAATTGACATGGCTGTTCAATGAGCACCTGGGAAAGAAAGGTATC
AGTGGGTTCATCAACGTAGATTACGAGAGTAAAGTTTTGTCTGTTGAGCTGACCATGCCT
CAAGATGCATCCCGTGATACCGTCAGAGACACCAGAGGACTGTCAGGAGGGGAGCGATCT
TTTTCAACACTTTGCTTCACTTTAGCTCTTCATGGAATGACAGAAGCACCTTTTAGAGCC
ATGGATGAGTTTGATGTATTCATGGATGCAGTGAGTCGCAAAATAAGCTTGGACACCTTG
GTAGATTTTGCTGTTGCACAAGGGTCACAATGGGTACTTATAACACCGCATGATATCAGC
ATGGTGAAGCCTGGAGATCGAGTCAAGAAGCAGCAAATGGCCGCCCCTCGCGGTTGACTC
AGGGCTTGGTTGTCCGTCGTTGTGCTCAGCACTGTATATATCTCCTAGCCTCAGGGTCCA
CCTTTGACAGAACCTCTCGTGAACTTCTCGTTTCATATCTAAGTTGTACTACTCAGGGCT
TGGTTGTCCGTTGTTGTGCTCAGCACTGTATATATCTCCTAGCCTCAGGGTCCACCTTTG
ACAGAATCTCTTGTGAACTTCTGATTTCATATCTAAGTTGTACTACACAGCTTGTTTCGA
AGTGTACCAGCACTTGTTGTGTTATTTAGGACTCCGTCTCTGGCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_12832 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi4g08527.1	1050	4e-94
Arabidopsis v10	AT5G61460.1	1057	7e-77	\| Symbols: MIM, ATRAD18, SMC6B \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:24714551-24721841 REVERSE LENGTH=1057