barSeed - Barley Seed Development Database

Probe CUST_27819_PI390587928

Source Contig U35_12833

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27819_PI390587928	Hv_44K_v2	TGTGAAAAGGAATGTTCTTTGCCCATCTGTAAATGGTAGCAGCCCCTCAACCTCAAAAAA	609	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	44.600	9.057	1.109	0.770	0.295	0.363
Raw	2009.517	597.604	67.882	74.506	9.818	13.411

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55847.1	959	3e-22	676 - 731	100	56 / 56	plus	ABC25945
JLOC1	JLOC1_36062.1	879	1e-22	635 - 690	100	56 / 56	plus
Harvest21	ABC25945	680	3e-25	12 - 71	100	60 / 60	minus	ABC25945
Harvest35	U35_12833	680	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_12833 680 Hv_44K_v2
GCTCTCTGCTCCCTCCTCTTCTTGATTCTCGCCATTGCCGCCGTGCTCTCGCCATGGACG
GCGCCGACAGCCTGCGGTTCCAGCGGCAGGCCTCCTGCTCCTGCGCGCCCTCCATGTCGC
GCGGCTACGTCCGCGGCGGCTTCGACCTCGACGACGAAGACGACTTCGACACCTTCGACG
ACAAGGTCGGCGCCGTCCGCGGCGGGAGGGCGCCGCCCGCCGCCGCGTCGTCGCGCGGGT
GCGGCACGAAGCTGAGGAGCCTGTGGCGGAAGATCGTCCGGGAGAAGAAGAGGATACTGC
TCTGCTCCACCGGCTGCGTGCCCGTCGGGGGCTCTTCGGCGGCGGCGGCGCGGGAGCCAT
ACGACGCGTACAGCTACGCGCAGAACTTCGACGACGGCGCCGCGTGGGTAGAGCCGGACA
ACCTCTCGCGCTCCTTCTCCGCGCGATTCGCCGTCCCCTCCAGGGTCCTGCAGCGGGTCG
CCGTGTAGACACACACGACCCGACGACGGCGCCGGCCGCCGCGGCCGCGGATGACCGTCG
TTTCCTTTGTTTTCTTTCTCTGTTTCCCTGTTTTCTCGTCCCAGTTTCAGTTTTGGAGTC
GTCAACAACTGTGAAAAGGAATGTTCTTTGCCCATCTGTAAATGGTAGCAGCCCCTCAAC
CTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_12833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None