barSeed - Barley Seed Development Database

Probe CUST_27816_PI390587928

Source Contig U35_12836

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27816_PI390587928	Hv_44K_v2	GATCTCTTCAATAGCAAGTATCAAGCTAAACTGCCAATCTCAGGCCAATTACAACTTAAA	589	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.971	1.515	1.454	1.143	0.471	0.530
Raw	94.709	230.912	190.397	241.983	33.927	41.291

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65527.3	3628	2e-23	1024 - 1081	100	58 / 58	plus	ABC14915
MLOC	MLOC_65527.4	3576	2e-23	1024 - 1081	100	58 / 58	plus	ABC14915
MLOC	MLOC_65527.2	5575	2e-23	2786 - 2843	100	58 / 58	plus	ABC14915
MLOC	MLOC_65527.1	5990	2e-23	3194 - 3251	100	58 / 58	plus	ABC14915
MLOC	MLOC_65526.9	2739	2e-23	2662 - 2719	100	58 / 58	plus	None
MLOC	MLOC_65526.5	5659	2e-23	3621 - 3678	100	58 / 58	plus	ABC14915
JLOC1	JLOC1_43122.1	3099	1e-23	2540 - 2597	100	58 / 58	minus
JLOC1	JLOC1_43121.2	5642	1e-23	3608 - 3665	100	58 / 58	plus
Harvest35	U35_12836	662	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_12836 662 Hv_44K_v2
GCGGCACTGCCCTTTGCAATGCAATGAACAAGGTTCAGCCCCGCGCCATACCTAAGGTCG
TGGAAGCCCGCACAGATACTGTTATACCTGCTGATGGCTCAGCTTTGTGCGCATATCAGT
ACTTTGAGAATTTGCGCAACTTCCTTGTCAGTTTACAAGATATAGGGCTCCCTACATTTG
AGCTGTCTGACTTGGAAAAGGGTGGCAAGGGTGTTCGAGTTGTCGATTGCGTTCTTGCTC
TGAAGTCATTCAGTGAAAGTAAGACAACAGGGAGACAGACTCCGTGCATGGCATTGTGCT
GACAAATTCAACAGAAAGCTTTTGAAAAGAAGTATCTTCTTGAAACTCTTTGGAAGCATC
AACAATGTGGAGTGATTTACATCCACTGGATGGGTCATTTTATTACGTTGAATATAGATA
GAAGATCTTCAAGAGACAGAAAGAAGTTAAGCATGGGGAATTTCATATTTGGGATATGTA
CGTCTTCTATACTAGAAATTACTGTTGTACCATTTGTTCATGAGCGCTGCACCTTGTGAG
CAGTTGCTTCTAATGGACAGGCTAGCTGTGTTTATAGCATTTTTTACTTGATCTCTTCAA
TAGCAAGTATCAAGCTAAACTGCCAATCTCAGGCCAATTACAACTTAAAAAAAAAAAAAA
AG

Homology of Contig U35_12836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None