barSeed - Barley Seed Development Database

Probe CUST_27814_PI390587928

Source Contig U35_12838

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27814_PI390587928	Hv_44K_v2	GGTGTGTACTGAAAATCCGCTGTATGGATGCAACATTGAGAATTTGGTAGATTATTATTC	594	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.998	2.129	1.212	0.652	0.239	0.352
Raw	858.676	1454.211	703.213	618.970	79.416	125.471

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7557.2	2202	4e-23	1953 - 2013	98	60 / 61	plus
JLOC1	JLOC1_7557.1	2206	4e-23	1957 - 2017	98	60 / 61	plus
Harvest21	ABC23889	672	3e-25	19 - 78	100	60 / 60	minus	ABC23889
Harvest35	U35_12838	672	3e-25	595 - 654	100	60 / 60	plus

Contig Sequence (672 bp)

>U35_12838 672 Hv_44K_v2
CTAGAATGATGCCGATTCTTTCCGTGTCCATCATTTTCGACGACCTGCAGTGTGTTCTTT
CAGGTGTTGTTAGGGGCTGTGGCTTGCAAAAAATTGGTGCATGTGTCAACCTCAGTGCAT
ACTACCTTGTCGGCATCCCGGCGGCCCTATGCTTTGCCTTTGTCTACCATCTTGGCGGAA
TGTGGCTGTGGTTCGGAATAATCTGCGGACTAGTCGTCCAGATGATGTTGCTGCTGGCCA
TTACCATGTGCACCAACTGGGATAAAGAGGCTCTCAAGGCAAAGGACAGGGTTTTCAGTT
CGTCCCTGCCTCCAGACATGACGGCGACATGAACATGAGACAAAGATGCAGAATTGTTCT
TTGGCTAGGAGTCTAGGACCAGGACGCTAGCTCTCGGCAAAGGAGATAAGGAACTCGTCA
AGAATTTGGTTACCGGCTTCGTCTCCATGTCACCGGCATGATGCTTCCTCGAAGGAAACG
TCAGCCAACGAGTGATCTGTTTTGGTTATTTTTGTAGAAGACGTGAGATGATTGGGATGT
TTTCACGGGCAAAGTCATGGGCTTGATACGATACAAGGGAATAAAGTAAAATATGGTGTG
TACTGAAAATCCGCTGTATGGATGCAACATTGAGAATTTGGTAGATTATTATTCCTTATT
ACAAATATTAGA

Homology of Contig U35_12838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g30490.1	484	3e-55	protein\|MATE efflux family protein, putative, expressed
Brachypodium v1_2	Bradi5g07160.1	482	6e-59
Arabidopsis v10	None