barSeed - Barley Seed Development Database

Probe CUST_27813_PI390587928

Source Contig U35_12839

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27813_PI390587928	Hv_44K_v2	GACTGGCGATGTACAAATTTCGAGATCGAGTAAACCAAATAGTCTCAAGTAAAGTTAAAA	1042	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.425	1.640	1.029	0.952	0.464	0.451
Raw	541.648	567.876	315.619	446.630	78.725	82.708

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74720.2	1940	2e-24	1802 - 1861	100	60 / 60	plus	None
MLOC	MLOC_74720.4	1647	2e-24	1569 - 1628	100	60 / 60	plus	None
MLOC	MLOC_74720.1	2139	2e-24	2061 - 2120	100	60 / 60	plus	None
MLOC	AK377157	3057	3e-22	3002 - 3057	100	56 / 56	plus	None
JLOC1	JLOC1_49821.2	1888	8e-25	1706 - 1765	100	60 / 60	plus
JLOC1	JLOC1_49821.1	1928	8e-25	1746 - 1805	100	60 / 60	plus
Harvest35	U35_12839	1115	3e-25	1043 - 1102	100	60 / 60	plus

Contig Sequence (1115 bp)

>U35_12839 1115 Hv_44K_v2
CTCACGCTCCTCAACTACCGCGGGCTCACCGTCGTTGGGTGGGCTGCCATCTGCCTCGGG
GTCTTCTCCCTCCTGCCTTTCCTGGTCATGGGCTTCATCTCCATCCCCAAGCTCCGGCCG
GCGAGGTGGCTCGAGGTCGATCTCCACAACGTCGACTGGAACCTGTACCTGAACACTCTG
TTCTGGAACCTCAACTACTGGGACTCGATCAGCACGTTATCCGGCGAGATCAAGAACACT
GCAAAGACTCTGCCCAAGGCGCTGTTCTACGCGGTCATCTTCGTGGTCGTCGGTTACCTG
TACCCTCTCCTCGCCGGGACCGGCGCGGTGCCTCTGGACAGGGGGCAGTGGACCGACGGC
TACTTCGCGGACATCGCGAAGCTGCTCGGCGGCGCGTGGCTGATGTGGTGGATGCAAGCG
GCGGCGGCGATGTCGAACATGGGCATGTTCGTGGCGGAGATGAGCAGCGACTCATACCAG
CTCCTGGGCATGGCGGAGCGGGGCATGCTGCCGGCCTTCTTCGCGACCCGGTCGCGGTAT
GGAACCCCGCTGGTCGGCATCCTCTTCTCGGCCTCCGGCGTGCTGCTGCTGTCGACGATG
AGCTTCCAGGAAATCGTGGCGGCCGAGAACTTCCTCTACTGCTTCGGCATGCTCCTCGAG
TTCCTCTCGTTCGTCCTGCTGCGGGTGAGGCGGCCCGACGCCCCGCGGCCGTACAGGGTG
CCGCTGGGCACAGCCGGATGCGTGGTCATGCTGGTGCCCGCGACGGCGCTGATCGTGGCG
GTGCTCGCGCTGTCGACGCTGAAGGTGGCGCTGGTGAGCCTCGGTGCCCTGGCTATCGGG
CTCGTGCTGCAGCCTCTGCTGAAGTTCGTGGAGAAGAAGCAGTGGCTCAGGTTCTCCGTC
AACTCGGACCTCCCCGGCATGGACGTCAACCACCAGCCTGCCGCTCCCGACGACCCGTTG
CTCGTGTAGGGGCGAAAAATCGGCTAAACTTTTGCCTCGGGAGCAGGTGCATTCTCGCGT
CAGTTTGCGCTTGTTGAGTTTTGACTGGCGATGTACAAATTTCGAGATCGAGTAAACCAA
ATAGTCTCAAGTAAAGTTAAAAAAAAAAAAAAAAG

Homology of Contig U35_12839 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47210.1	565	0.0	protein\|amino acid permease family protein, putative, expressed
Brachypodium v1_2	Bradi3g52510.1	531	0.0
Arabidopsis v10	AT1G31830.1	495	1e-146	Amino acid permease family protein \| chr1:11418875-11420362 REVERSE LENGTH=495