- Probe CUST_27783_PI390587928
- Source Contig U35_36801
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27783_PI390587928 | Hv_44K_v2 | GTACCTACACAATACCTATTCAATACCACCTAACCCTATTTTTGCTATTGATAAGAGTTC | 368 | GeneList: thistle1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.306 | 2.120 | 0.890 | 0.783 | 0.965 | 1.094 |
| Raw | 2511.960 | 1725.600 | 719.559 | 913.980 | 416.584 | 540.163 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63245.1 | 870 | 2e-24 | 339 - 398 | 100 | 60 / 60 | plus | ABC32140 |
| JLOC1 | JLOC1_41418.1 | 870 | 8e-25 | 339 - 398 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32140 | 555 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus | ABC32140 |
| Harvest35 | U35_36801 | 555 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus |
Contig Sequence (555 bp)
>U35_36801 555 Hv_44K_v2 TTTGGTTTTAATTCTGTTCTTTATCCCCTAGTTTTTTCTTTGCCAAATTGCCCGAAGCTT ATGCTATTTTCAATCCAATCGTGGATATTATGCCTGTTATACCTCTATTCTTTTTTCTAT TAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCTTTGAAATCTTTAGTACTCTGTATGCC AAATTGAATGATGTGTTCATTCCAAAAAAAAAAATTAAAATGGGTAAAAGCCGAGAAGTT TTATATTTTTATATTATGAACCCTCAATTCTAAAATTGAAATTATTCTACATTGAATGGG TAGCTACAGCAATAAATTTGGATCAGCCTTTCTACTCCCCTGCACCTAGGTTGAGCAGGT ACCTTTAGGTACCTACACAATACCTATTCAATACCACCTAACCCTATTTTTGCTATTGAT AAGAGTTCTTATTATAAATGAATTCTTGCAATTTTTTTCCAGAATTCATTTTTGCATTTT TAGGTATCAAAAAAAACCATCCTAGTGGATCCGTGTGGTAAGGAAAAACTGGTAATCTAT TCCTTAAAAAAAAAA
Homology of Contig U35_36801 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |